BLASTX 2.1.3 [Apr-1-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query=
/phillip/projects/Xu/Fgr-S/seq_dir/blast_NcrP/Fgr-S_1_E02_T7.seq
         (366 letters)

Database: /phillip/Ncr/Ncr_P
           6531 sequences; 3,158,374 total letters

Searching..................................................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

NCU02218.1 NCU02218.1 predicted protein (3119 - 6577)                  28  0.67
NCU07312.1 NCU07312.1 predicted protein (39271 - 37688)                25  9.7

>NCU02218.1 NCU02218.1 predicted protein (3119 - 6577)
          Length = 1026

 Score = 28.5 bits (62), Expect = 0.67
 Identities = 10/33 (30%), Positives = 20/33 (60%)
 Frame = -1

Query: 300 PTRNENENDITASCPFLVWPLYSTCSFPSDVDL 202
           P R+   N + +SCP  +W  +S+ S+ S +++
Sbjct: 623 PLRSYYNNSLHSSCPLRIWDAFSSGSYSSILEM 655



>NCU07312.1 NCU07312.1 predicted protein (39271 - 37688)
          Length = 527

 Score = 24.6 bits (52), Expect = 9.7
 Identities = 11/37 (29%), Positives = 16/37 (42%)
 Frame = -1

Query: 300 PTRNENENDITASCPFLVWPLYSTCSFPSDVDLYISA 190
           P  N N N++  + PF+  P  +   FP    L   A
Sbjct: 64  PDNNNNNNNMNPNIPFVSTPADTPSPFPEPTPLQSDA 100



  Database: /phillip/Ncr/Ncr_P
    Posted date:  May 20, 2002 12:05 PM
  Number of letters in database: 3,158,374
  Number of sequences in database:  6531
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2226955
Number of Sequences: 6531
Number of extensions: 40144
Number of successful extensions: 78
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 78
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 78
length of query: 122
length of database: 3,158,374
effective HSP length: 42
effective length of query: 79
effective length of database: 2,884,072
effective search space: 227841688
effective search space used: 227841688
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)