BLASTX 2.1.3 [Apr-1-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query=
/phillip/projects/Xu/Fgr-S/seq_dir/blast_NcrP/Fgr-S_1_E03_T7.seq
         (237 letters)

Database: /phillip/Ncr/Ncr_P
           6531 sequences; 3,158,374 total letters

Searching..................................................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

NCU00032.1 NCU00032.1 hypothetical protein (122970 - 120367)           26  2.2
NCU06502.1 NCU06502.1 predicted protein (113763 - 113168)              24  8.2

>NCU00032.1 NCU00032.1 hypothetical protein (122970 - 120367)
          Length = 823

 Score = 25.8 bits (55), Expect = 2.2
 Identities = 13/46 (28%), Positives = 23/46 (49%)
 Frame = +3

Query: 9   AAEVLNDVKTLQNITNDLKTFTKYHMH*FSLAPLHQESIYKQQSYM 146
           A E   D   +    NDL TFT+  +H +  + L +  I +++ Y+
Sbjct: 405 AIEHARDTNVVLQAQNDLLTFTQKLLHEWEASKLSEIEISEEEVYL 450



>NCU06502.1 NCU06502.1 predicted protein (113763 - 113168)
          Length = 72

 Score = 23.9 bits (50), Expect = 8.2
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = +3

Query: 180 WDSCFHDVYLVSTCP 224
           WD+CF  +  + TCP
Sbjct: 17  WDTCFRGLPTLPTCP 31



  Database: /phillip/Ncr/Ncr_P
    Posted date:  May 20, 2002 12:05 PM
  Number of letters in database: 3,158,374
  Number of sequences in database:  6531
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1389890
Number of Sequences: 6531
Number of extensions: 22906
Number of successful extensions: 47
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 47
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 47
length of query: 79
length of database: 3,158,374
effective HSP length: 39
effective length of query: 39
effective length of database: 2,903,665
effective search space: 113242935
effective search space used: 113242935
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 49 (23.5 bits)