BLASTX 2.1.3 [Apr-1-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query=
/phillip/projects/Xu/Fgr-S/seq_dir/blast_NcrP/Fgr-S_1_E06_T7.seq
(316 letters)
Database: /phillip/Ncr/Ncr_P
6531 sequences; 3,158,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
NCU01304.1 NCU01304.1 hypothetical protein ( (AL451021) related ... 30 0.24
NCU02676.1 NCU02676.1 predicted protein (112540 - 110808) 26 2.6
NCU00567.1 NCU00567.1 ARG-6 PROTEIN PRECURSOR [CONTAINS: N-ACETY... 26 3.4
>NCU01304.1 NCU01304.1 hypothetical protein ( (AL451021) related to
PET127 [Neurospora crass
Length = 1151
Score = 29.6 bits (65), Expect = 0.24
Identities = 18/53 (33%), Positives = 26/53 (48%), Gaps = 2/53 (3%)
Frame = +1
Query: 55 DAVETAVNTLMGEGEATEELRMRA--EDCAIKARRAFDEEGSSYNNVRLLIQE 207
+AVE A +GE EA EE+ ED +K A + E +VR I++
Sbjct: 707 EAVEEATEESVGEPEAREEVTTADVWEDMVVKVEEALENEEHGVTSVREAIEQ 759
>NCU02676.1 NCU02676.1 predicted protein (112540 - 110808)
Length = 448
Score = 26.2 bits (56), Expect = 2.6
Identities = 19/58 (32%), Positives = 26/58 (44%), Gaps = 4/58 (6%)
Frame = +1
Query: 22 GSENQEVMVTRDAVETAVNT----LMGEGEATEELRMRAEDCAIKARRAFDEEGSSYN 183
G E T DA E VN +G+GE TE R+ AE + + GS+Y+
Sbjct: 317 GVRQPETSQTLDAEERGVNREDEMALGDGEGTETDRLVAESRGGQGQDDEQRLGSNYS 374
>NCU00567.1 NCU00567.1 ARG-6 PROTEIN PRECURSOR [CONTAINS:
N-ACETYL-GAMMA-GLUTAMYL-PHOSPHATE
Length = 871
Score = 25.8 bits (55), Expect = 3.4
Identities = 15/59 (25%), Positives = 29/59 (48%), Gaps = 7/59 (11%)
Frame = +1
Query: 7 SRPRWGSENQEVMVTRDAVETAVN-------TLMGEGEATEELRMRAEDCAIKARRAFD 162
++ +WG + V + A+ETA++ T M E + + L + A+ A + RA +
Sbjct: 186 NKEKWGLVGKVTGVNKQAIETAISNGYLPILTSMAETDDGQILNVNADVAAAELARALE 244
Database: /phillip/Ncr/Ncr_P
Posted date: May 20, 2002 12:05 PM
Number of letters in database: 3,158,374
Number of sequences in database: 6531
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1878433
Number of Sequences: 6531
Number of extensions: 32139
Number of successful extensions: 93
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 93
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 93
length of query: 105
length of database: 3,158,374
effective HSP length: 42
effective length of query: 62
effective length of database: 2,884,072
effective search space: 178812464
effective search space used: 178812464
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)