BLASTX 2.1.3 [Apr-1-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query=
/phillip/projects/Xu/Fgr-S/seq_dir/blast_NcrP/Fgr-S_1_E07_T7.seq
         (180 letters)

Database: /phillip/Ncr/Ncr_P
           6531 sequences; 3,158,374 total letters

Searching..................................................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

NCU00968.1 NCU00968.1 hypothetical protein (91744 - 90242)             25  2.3
NCU00302.1 NCU00302.1 hypothetical protein (298478 - 302609)           24  3.9
NCU07648.1 NCU07648.1 predicted protein (2795 - 7761)                  24  3.9
NCU01005.1 NCU01005.1 predicted protein (36307 - 35381)                24  5.1
NCU07532.1 NCU07532.1 predicted protein (35712 - 33691)                23  8.7

>NCU00968.1 NCU00968.1 hypothetical protein (91744 - 90242)
          Length = 500

 Score = 25.0 bits (53), Expect = 2.3
 Identities = 11/24 (45%), Positives = 12/24 (49%)
 Frame = +3

Query: 30  IFSPRHYMIITHPDKQSKLRLHHR 101
           IF P H   I HPD+     LH R
Sbjct: 66  IFQPTHEFQIVHPDQDLPTGLHVR 89



>NCU00302.1 NCU00302.1 hypothetical protein (298478 - 302609)
          Length = 969

 Score = 24.3 bits (51), Expect = 3.9
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +3

Query: 39  PRHYMIITHPDKQSKLRLHHRATQSH 116
           P H   I HP  Q++L+L H+  Q H
Sbjct: 493 PNHVNQI-HPQLQAQLQLQHQQAQEH 517



>NCU07648.1 NCU07648.1 predicted protein (2795 - 7761)
          Length = 938

 Score = 24.3 bits (51), Expect = 3.9
 Identities = 12/25 (48%), Positives = 15/25 (60%), Gaps = 2/25 (8%)
 Frame = +1

Query: 61  PIPINKVNSDYTTAQRRVT--RSVQ 129
           P+P+ +     T AQR VT  RSVQ
Sbjct: 749 PLPLGRTQDKQTAAQRNVTGQRSVQ 773



>NCU01005.1 NCU01005.1 predicted protein (36307 - 35381)
          Length = 308

 Score = 23.9 bits (50), Expect = 5.1
 Identities = 15/47 (31%), Positives = 24/47 (50%), Gaps = 4/47 (8%)
 Frame = +3

Query: 18  TTHSIFSPRHYMIITHPDKQSKLRLHHRATQSHKVC----AT*HVRE 146
           ++HS    +H  I   P  ++  +L+HR TQ ++      AT HV E
Sbjct: 46  SSHSQSQQQHQSIPQKPLSEALQKLNHRLTQHNRRAYPPQATRHVAE 92



>NCU07532.1 NCU07532.1 predicted protein (35712 - 33691)
          Length = 502

 Score = 23.1 bits (48), Expect = 8.7
 Identities = 12/32 (37%), Positives = 12/32 (37%)
 Frame = +3

Query: 21  THSIFSPRHYMIITHPDKQSKLRLHHRATQSH 116
           THS F         H   Q  L  HHR   SH
Sbjct: 280 THSHFHSHALSPHAHAQAQDHLGTHHRDHHSH 311



  Database: /phillip/Ncr/Ncr_P
    Posted date:  May 20, 2002 12:05 PM
  Number of letters in database: 3,158,374
  Number of sequences in database:  6531
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1084159
Number of Sequences: 6531
Number of extensions: 16676
Number of successful extensions: 36
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 36
length of query: 60
length of database: 3,158,374
effective HSP length: 35
effective length of query: 24
effective length of database: 2,929,789
effective search space: 70314936
effective search space used: 70314936
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 48 (23.1 bits)