BLASTX 2.1.3 [Apr-1-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query=
/phillip/projects/Xu/Fgr-S/seq_dir/blast_NcrP/Fgr-S_1_E08_T7.seq
(275 letters)
Database: /phillip/Ncr/Ncr_P
6531 sequences; 3,158,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
NCU07839.1 NCU07839.1 hypothetical protein (73227 - 75693) 44 8e-06
NCU01369.1 NCU01369.1 hypothetical protein (764 - 2901) 35 0.006
NCU06390.1 NCU06390.1 predicted protein (51830 - 49652) 26 2.2
NCU07909.1 NCU07909.1 predicted protein (31544 - 28339) 25 4.9
NCU06738.1 NCU06738.1 hypothetical protein (19361 - 15462) 25 6.4
NCU01800.1 NCU01800.1 hypothetical protein (34722 - 33200) 24 8.4
>NCU07839.1 NCU07839.1 hypothetical protein (73227 - 75693)
Length = 651
Score = 44.3 bits (103), Expect = 8e-06
Identities = 21/42 (50%), Positives = 29/42 (69%)
Frame = -3
Query: 255 AGATGMAFTFFTHSNAKYSRNLVKILREAGQVVNPALEAMSK 130
AGA G A TFFT N+K +R LV +L+EA Q ++P L M++
Sbjct: 564 AGAKGTAITFFTTDNSKQARELVGVLQEAKQQIDPRLAEMAR 605
>NCU01369.1 NCU01369.1 hypothetical protein (764 - 2901)
Length = 687
Score = 34.7 bits (78), Expect = 0.006
Identities = 17/44 (38%), Positives = 26/44 (58%)
Frame = -3
Query: 255 AGATGMAFTFFTHSNAKYSRNLVKILREAGQVVNPALEAMSKSA 124
AG TG+A FF N R L+++L+EA Q V LE +++ +
Sbjct: 546 AGNTGIATAFFNRGNRGVVRELLELLKEANQEVPAFLETIARES 589
>NCU06390.1 NCU06390.1 predicted protein (51830 - 49652)
Length = 658
Score = 26.2 bits (56), Expect = 2.2
Identities = 12/25 (48%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
Frame = -1
Query: 263 PRLPV-LLGWHSRSSRIPMQNIQGI 192
PR PV +LGW + IPM +I G+
Sbjct: 20 PRHPVSMLGWEIAAGAIPMTSISGL 44
>NCU07909.1 NCU07909.1 predicted protein (31544 - 28339)
Length = 1051
Score = 25.0 bits (53), Expect = 4.9
Identities = 10/28 (35%), Positives = 20/28 (70%), Gaps = 2/28 (7%)
Frame = -1
Query: 254 PVLLGWHSRSSRIPMQNIQ--GILLRSC 177
PV++ SR +R+P++N++ G ++R C
Sbjct: 927 PVVIHHGSRDTRVPVENVKWLGKMMRRC 954
>NCU06738.1 NCU06738.1 hypothetical protein (19361 - 15462)
Length = 1256
Score = 24.6 bits (52), Expect = 6.4
Identities = 9/20 (45%), Positives = 15/20 (75%)
Frame = -1
Query: 254 PVLLGWHSRSSRIPMQNIQG 195
PV+L W+ R+S+ P + +QG
Sbjct: 232 PVILLWNLRNSQAPEKTLQG 251
>NCU01800.1 NCU01800.1 hypothetical protein (34722 - 33200)
Length = 477
Score = 24.3 bits (51), Expect = 8.4
Identities = 16/53 (30%), Positives = 26/53 (48%), Gaps = 5/53 (9%)
Frame = +2
Query: 122 PADLDIASSAGFTTCPASRKILTRFLEYFALEC-----VKNVNAIPVAPATSA 265
PA AS+ +TCPA+++ ++F LE KNV A+ + + A
Sbjct: 21 PAAAPAASTPAASTCPAAQQQQSQFHSSAHLEARRRSRFKNVRAVEMGLTSDA 73
Database: /phillip/Ncr/Ncr_P
Posted date: May 20, 2002 12:05 PM
Number of letters in database: 3,158,374
Number of sequences in database: 6531
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1549084
Number of Sequences: 6531
Number of extensions: 25503
Number of successful extensions: 56
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 56
length of query: 91
length of database: 3,158,374
effective HSP length: 39
effective length of query: 52
effective length of database: 2,903,665
effective search space: 150990580
effective search space used: 150990580
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)