BLASTX 2.1.3 [Apr-1-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query=
/phillip/projects/Xu/Fgr-S/seq_dir/blast_NcrP/Fgr-S_1_E11_T7.seq
         (514 letters)

Database: /phillip/Ncr/Ncr_P
           6531 sequences; 3,158,374 total letters

Searching..................................................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

NCU00222.1 NCU00222.1 hypothetical protein (87525 - 84606)             27  2.4
NCU07890.1 NCU07890.1 hypothetical protein (41880 - 46311)             26  5.4
NCU01240.1 NCU01240.1 hypothetical protein ( (AL513442) conserve...    26  7.0
NCU06427.1 NCU06427.1 hypothetical protein (56693 - 54719)             25  9.2

>NCU00222.1 NCU00222.1 hypothetical protein (87525 - 84606)
          Length = 809

 Score = 27.3 bits (59), Expect = 2.4
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = +2

Query: 320 KRYGNSYRKKKKNKERESQMNRKIHVWFGKRS 415
           ++Y +  R+++  +E+E Q NRKI    GK S
Sbjct: 161 EKYKDEIRQREAEREKEEQANRKIAKATGKAS 192



>NCU07890.1 NCU07890.1 hypothetical protein (41880 - 46311)
          Length = 1063

 Score = 26.2 bits (56), Expect = 5.4
 Identities = 11/17 (64%), Positives = 14/17 (81%)
 Frame = -3

Query: 194 AKLFLYFYLPSLIISIS 144
           AKL LYFYLP ++ +IS
Sbjct: 393 AKLGLYFYLPEIVPNIS 409



>NCU01240.1 NCU01240.1 hypothetical protein ( (AL513442) conserved
           hypothetical protein [Neu
          Length = 490

 Score = 25.8 bits (55), Expect = 7.0
 Identities = 15/40 (37%), Positives = 19/40 (47%)
 Frame = +2

Query: 251 YIGFGILKYKHKKEDRG*AHYLKKRYGNSYRKKKKNKERE 370
           +I  G+L  K +  DRG AHY       SY  +   KE E
Sbjct: 375 FIDLGVLTLKKEDMDRGLAHY------TSYCDRTGTKENE 408



>NCU06427.1 NCU06427.1 hypothetical protein (56693 - 54719)
          Length = 197

 Score = 25.4 bits (54), Expect = 9.2
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = +2

Query: 272 KYKHKKEDRG*AHYLKKRYGNSYRKKKKNKERESQMNRK 388
           K K KK+ R      KK+     +KKKK K+++ +  +K
Sbjct: 130 KKKKKKKKRKKKKKKKKKKKKKKKKKKKKKKKKKKKKKK 168



  Database: /phillip/Ncr/Ncr_P
    Posted date:  May 20, 2002 12:05 PM
  Number of letters in database: 3,158,374
  Number of sequences in database:  6531
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2009978
Number of Sequences: 6531
Number of extensions: 26360
Number of successful extensions: 207
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 67
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 146
length of query: 171
length of database: 3,158,374
effective HSP length: 42
effective length of query: 128
effective length of database: 2,884,072
effective search space: 369161216
effective search space used: 369161216
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)