BLASTX 2.1.3 [Apr-1-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query=
/phillip/projects/Xu/Fgr-S/seq_dir/blast_NcrP/Fgr-S_1_F06_T7.seq
(127 letters)
Database: /phillip/Ncr/Ncr_P
6531 sequences; 3,158,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
NCU06928.1 NCU06928.1 predicted protein (170505 - 173135) 25 1.8
NCU01376.1 NCU01376.1 alkaline phosphatase [MIPS] (15404 - 17657) 25 3.1
NCU07225.1 NCU07225.1 hypothetical protein (233894 - 234855) 24 4.1
NCU00302.1 NCU00302.1 hypothetical protein (298478 - 302609) 24 5.3
NCU01932.1 NCU01932.1 hypothetical protein (28262 - 31956) 24 5.3
NCU01431.1 NCU01431.1 hypothetical protein (14764 - 9254) 24 5.3
NCU07496.1 NCU07496.1 hypothetical protein (67709 - 74407) 23 6.9
NCU01543.1 NCU01543.1 hypothetical protein (19493 - 22219) 23 9.1
NCU07282.1 NCU07282.1 predicted protein (15741 - 11823) 23 9.1
NCU02755.1 NCU02755.1 hypothetical protein (22404 - 20770) 23 9.1
NCU07247.1 NCU07247.1 hypothetical protein (14533 - 15999) 23 9.1
>NCU06928.1 NCU06928.1 predicted protein (170505 - 173135)
Length = 853
Score = 25.4 bits (54), Expect = 1.8
Identities = 12/31 (38%), Positives = 16/31 (50%)
Frame = +2
Query: 35 ASPKTPTC*GKLGKTPKQLPPQPARGGPQKP 127
A+P TP+ P +PP+PA G P P
Sbjct: 324 ATPATPSI-------PSGVPPRPATGAPAAP 347
>NCU01376.1 NCU01376.1 alkaline phosphatase [MIPS] (15404 - 17657)
Length = 668
Score = 24.6 bits (52), Expect = 3.1
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = -3
Query: 74 YPVSPNKWGFLGKQDEK*SLQIFC 3
Y VS NK L D+K +L IFC
Sbjct: 355 YSVSLNKTSLLALPDDKKALGIFC 378
>NCU07225.1 NCU07225.1 hypothetical protein (233894 - 234855)
Length = 293
Score = 24.3 bits (51), Expect = 4.1
Identities = 11/17 (64%), Positives = 11/17 (64%)
Frame = +1
Query: 61 GETG*NPKTITTPTCPG 111
G T NP T TTPT PG
Sbjct: 235 GTTPENPGTTTTPTNPG 251
>NCU00302.1 NCU00302.1 hypothetical protein (298478 - 302609)
Length = 969
Score = 23.9 bits (50), Expect = 5.3
Identities = 8/19 (42%), Positives = 11/19 (57%)
Frame = -3
Query: 86 VLGFYPVSPNKWGFLGKQD 30
+LG+ P +P KW G D
Sbjct: 173 ILGYGPYTPTKWALRGLAD 191
>NCU01932.1 NCU01932.1 hypothetical protein (28262 - 31956)
Length = 1183
Score = 23.9 bits (50), Expect = 5.3
Identities = 10/21 (47%), Positives = 14/21 (66%), Gaps = 1/21 (4%)
Frame = +2
Query: 50 PTC*GKLGKTPKQL-PPQPAR 109
P C G LG PK++ PP+P +
Sbjct: 851 PNCRGVLGPKPKEVKPPKPPK 871
>NCU01431.1 NCU01431.1 hypothetical protein (14764 - 9254)
Length = 1817
Score = 23.9 bits (50), Expect = 5.3
Identities = 9/19 (47%), Positives = 9/19 (47%)
Frame = +2
Query: 71 GKTPKQLPPQPARGGPQKP 127
G P PP P GGP P
Sbjct: 1075 GGLPGAAPPMPGAGGPPPP 1093
>NCU07496.1 NCU07496.1 hypothetical protein (67709 - 74407)
Length = 2140
Score = 23.5 bits (49), Expect = 6.9
Identities = 9/22 (40%), Positives = 14/22 (62%)
Frame = +3
Query: 39 PQKPPLVRGNWVKPQNNYHPNL 104
P+KPP + +P+ +YHP L
Sbjct: 182 PEKPPAQVHDEEEPKRSYHPLL 203
>NCU01543.1 NCU01543.1 hypothetical protein (19493 - 22219)
Length = 793
Score = 23.1 bits (48), Expect = 9.1
Identities = 9/16 (56%), Positives = 10/16 (62%)
Frame = +2
Query: 80 PKQLPPQPARGGPQKP 127
P Q PPQ G PQ+P
Sbjct: 308 PPQQPPQQQPGQPQQP 323
>NCU07282.1 NCU07282.1 predicted protein (15741 - 11823)
Length = 1062
Score = 23.1 bits (48), Expect = 9.1
Identities = 7/9 (77%), Positives = 7/9 (77%)
Frame = -2
Query: 114 PPRAGWGGN 88
PPR GWG N
Sbjct: 1052 PPRGGWGNN 1060
>NCU02755.1 NCU02755.1 hypothetical protein (22404 - 20770)
Length = 452
Score = 23.1 bits (48), Expect = 9.1
Identities = 9/23 (39%), Positives = 14/23 (60%)
Frame = +3
Query: 51 PLVRGNWVKPQNNYHPNLPGGAL 119
P+VR N ++N P+ PGG +
Sbjct: 418 PVVRANGTGLESNVGPDQPGGII 440
>NCU07247.1 NCU07247.1 hypothetical protein (14533 - 15999)
Length = 488
Score = 23.1 bits (48), Expect = 9.1
Identities = 9/23 (39%), Positives = 10/23 (43%)
Frame = -1
Query: 112 PPGRLGW*LFWGFTQFPLTSGGF 44
P GR W LFW +G F
Sbjct: 374 PTGRAAWLLFWSIVMNMSFAGSF 396
Database: /phillip/Ncr/Ncr_P
Posted date: May 20, 2002 12:05 PM
Number of letters in database: 3,158,374
Number of sequences in database: 6531
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1225532
Number of Sequences: 6531
Number of extensions: 22113
Number of successful extensions: 92
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 88
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 92
length of query: 42
length of database: 3,158,374
effective HSP length: 17
effective length of query: 24
effective length of database: 3,047,347
effective search space: 73136328
effective search space used: 73136328
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 48 (23.1 bits)