BLASTX 2.1.3 [Apr-1-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query=
/phillip/projects/Xu/Fgr-S/seq_dir/blast_NcrP/Fgr-S_1_F08_T7.seq
(706 letters)
Database: /phillip/Ncr/Ncr_P
6531 sequences; 3,158,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
NCU09757.1 NCU09757.1 hypothetical protein (9557 - 11222) 39 0.001
NCU01737.1 NCU01737.1 hypothetical protein ( hypothetical protei... 31 0.25
NCU02626.1 NCU02626.1 hypothetical protein (13734 - 10653) 30 0.72
NCU08686.1 NCU08686.1 hypothetical protein (795 - 2865) 29 0.94
NCU09104.1 NCU09104.1 hypothetical protein (122932 - 115837) 29 1.2
NCU09433.1 NCU09433.1 predicted protein (6733 - 4401) 28 2.1
NCU02244.1 NCU02244.1 predicted protein (29647 - 32043) 28 2.1
NCU08049.1 NCU08049.1 predicted protein (6141 - 2036) 27 4.7
NCU07205.1 NCU07205.1 hypothetical protein (185378 - 183669) 27 4.7
NCU00045.1 NCU00045.1 hypothetical protein (28761 - 24920) 27 4.7
NCU08069.1 NCU08069.1 predicted protein (72311 - 74191) 27 6.1
NCU08244.1 NCU08244.1 predicted protein (174163 - 172576) 26 8.0
NCU07011.1 NCU07011.1 hypothetical protein (9008 - 12368) 26 8.0
NCU07788.1 NCU07788.1 related to transcription activator amyR [M... 26 8.0
NCU02478.1 NCU02478.1 hypothetical protein (48783 - 41356) 26 8.0
>NCU09757.1 NCU09757.1 hypothetical protein (9557 - 11222)
Length = 534
Score = 38.9 bits (89), Expect = 0.001
Identities = 32/118 (27%), Positives = 53/118 (44%)
Frame = +3
Query: 225 NLVVVCGDHGKVSKDKEEQAEFKKMFDLIEQYNLIGHIRWISAQMNRVRNGELYRYICDM 404
N + G S D E+ E + D +E ++G IR + VR G +Y
Sbjct: 265 NTRFIIAGSGPKSIDLEQMIEQNVLQDRVE---MLGPIRHSEVRDVMVR-GHIY------ 314
Query: 405 KGAFVQPAFYEAFGLTVIEAMTCGLPTFATAYGGPAEIIVNGVSGYHIDPYQNDKASA 578
+ P+ EAFG ++EA +CGL T GG E++ ++ + P ++D +A
Sbjct: 315 ----LHPSLTEAFGTVIVEAASCGLYVVCTQVGGIPEVLPGHMTVF-AKPEEDDLVAA 367
>NCU01737.1 NCU01737.1 hypothetical protein ( hypothetical protein
B24H17.130 [imported] - N
Length = 1065
Score = 31.2 bits (69), Expect = 0.25
Identities = 15/41 (36%), Positives = 21/41 (50%)
Frame = -2
Query: 348 RSSGCVQSGCTVQ*DQTSS*TLPAPPCPWTPFHGHHRQPLG 226
R SG ++ C + D +P+PP PWTP + RQ G
Sbjct: 495 RDSGALKLACKLLKDSYEPTAIPSPPRPWTP-NPEERQDTG 534
>NCU02626.1 NCU02626.1 hypothetical protein (13734 - 10653)
Length = 938
Score = 29.6 bits (65), Expect = 0.72
Identities = 13/26 (50%), Positives = 17/26 (65%)
Frame = -2
Query: 300 TSS*TLPAPPCPWTPFHGHHRQPLGL 223
T + T+P PP P P HG HR+P+ L
Sbjct: 870 TPAPTMPPPPPPG-PIHGEHREPIRL 894
>NCU08686.1 NCU08686.1 hypothetical protein (795 - 2865)
Length = 667
Score = 29.3 bits (64), Expect = 0.94
Identities = 21/52 (40%), Positives = 26/52 (49%), Gaps = 4/52 (7%)
Frame = +2
Query: 557 PE*QGLRTACGLLWE----VQGRPEPLEQDLAGRTPAHRGEVHLEAVPARAA 700
P+ QG+ G++WE Q RP P E A PAH H A PA+AA
Sbjct: 393 PQYQGV--PIGMVWEGGLQPQPRPAPPEPAPAQAAPAHAAPAH--AAPAQAA 440
>NCU09104.1 NCU09104.1 hypothetical protein (122932 - 115837)
Length = 2300
Score = 28.9 bits (63), Expect = 1.2
Identities = 20/44 (45%), Positives = 29/44 (65%)
Frame = -2
Query: 705 RAAARAGTASRCTSPRCAGVLPARSCSSGSGLPCTSQRSPQAVR 574
RAAA+A AS ++P AG PA S S+ + +P + + SPQA+R
Sbjct: 1940 RAAAQAAKASVASTP--AG--PAVSKSTPNDVPSSERISPQALR 1979
>NCU09433.1 NCU09433.1 predicted protein (6733 - 4401)
Length = 748
Score = 28.1 bits (61), Expect = 2.1
Identities = 16/52 (30%), Positives = 24/52 (45%), Gaps = 1/52 (1%)
Frame = -2
Query: 363 GSSEQRSSGCVQSGCTVQ*DQT-SS*TLPAPPCPWTPFHGHHRQPLGLPAPV 211
G+ E+RS GCV D+ L +P P P GH+R+ + P+
Sbjct: 327 GNGEERSQGCVDGSEKKGEDRRWGPPRLFSPTTPGAPLGGHYRRKSSMVPPI 378
>NCU02244.1 NCU02244.1 predicted protein (29647 - 32043)
Length = 606
Score = 28.1 bits (61), Expect = 2.1
Identities = 23/85 (27%), Positives = 37/85 (43%), Gaps = 13/85 (15%)
Frame = -3
Query: 551 IDVVAGHTIHNDLSWTTICSGECW-----KATCHGLYHSKTESLI----ESRLHKGSLHV 399
ID+++ HT+H+D++ CSGE + K H + T+SL + G H
Sbjct: 351 IDLLSKHTMHSDVATYIACSGEFFIRRISKRHRHHHHPHNTDSLSHHFNDQESGNGESHT 410
Query: 398 ADVAVELTIAD----TVHLSRDPAD 336
+ + D + SRDP D
Sbjct: 411 CENGFDHETHDHPSASSETSRDPED 435
>NCU08049.1 NCU08049.1 predicted protein (6141 - 2036)
Length = 982
Score = 26.9 bits (58), Expect = 4.7
Identities = 12/34 (35%), Positives = 15/34 (43%)
Frame = -2
Query: 444 RKPHRKQAAQRLPSCRRCSGRAHHCGHGSSEQRS 343
RK K QR P C C + CG+ E +S
Sbjct: 98 RKTKAKCGGQR-PKCNNCKAKGRQCGYDGEEGQS 130
>NCU07205.1 NCU07205.1 hypothetical protein (185378 - 183669)
Length = 529
Score = 26.9 bits (58), Expect = 4.7
Identities = 21/65 (32%), Positives = 29/65 (44%)
Frame = -1
Query: 316 CSIRSNIFLNSACSSLSLDTFPWSPQTTTRFTSSCRRGFRPYISTRPVIFLTRSNLAIEK 137
CS S + +NS SS L P S T+ + GF +I TRP+ LA +
Sbjct: 307 CSFGSELAINSVLSSYFLSVAPSSLSQTSAANYAAIFGFLNFI-TRPL-----GGLASDY 360
Query: 136 MIGFF 122
+ FF
Sbjct: 361 LFSFF 365
>NCU00045.1 NCU00045.1 hypothetical protein (28761 - 24920)
Length = 1261
Score = 26.9 bits (58), Expect = 4.7
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = -3
Query: 206 RIPPIHFYQASHILDTVQPSHREDDRLLL 120
++ PIH LD QPS+R+ DR+ L
Sbjct: 258 KVLPIHNQTPKERLDLKQPSYRKTDRIAL 286
>NCU08069.1 NCU08069.1 predicted protein (72311 - 74191)
Length = 577
Score = 26.6 bits (57), Expect = 6.1
Identities = 19/52 (36%), Positives = 23/52 (43%), Gaps = 3/52 (5%)
Frame = -2
Query: 354 EQRSSGCVQSGCTVQ*DQTSS*TLP---APPCPWTPFHGHHRQPLGLPAPVG 208
EQ S +Q GC +LP AP C WTP+H PL + P G
Sbjct: 171 EQYSPPHLQQGCNGH-------SLPYVNAPGC-WTPYHPASSAPLYMQPPFG 214
>NCU08244.1 NCU08244.1 predicted protein (174163 - 172576)
Length = 374
Score = 26.2 bits (56), Expect = 8.0
Identities = 25/92 (27%), Positives = 42/92 (45%), Gaps = 3/92 (3%)
Frame = -1
Query: 673 VYFSSMRWSPPCEILFQWLGSSLHFPKKSTS-SAEALSFW*GSMW*P-DTPFTMISAG-P 503
++ + R PP I + L +S HFP + S A S+ + P +TP+ ++ P
Sbjct: 17 LFAAQSRPLPPSHISARGLQASSHFPTNTASHPANTPSYPANTPSYPANTPYYPVNTPIP 76
Query: 502 PYAVANVGRPHVMASITVRPKAS*KAGCTKAP 407
P +N R + S+TV P+ + A P
Sbjct: 77 PLRTSNPVRSNQPVSLTVYPEPTNHAISNNGP 108
>NCU07011.1 NCU07011.1 hypothetical protein (9008 - 12368)
Length = 1057
Score = 26.2 bits (56), Expect = 8.0
Identities = 11/30 (36%), Positives = 19/30 (62%)
Frame = +3
Query: 615 PSHWNKISQGGLQRIEEKYTWKLYLPGRPL 704
PSH +K +GG+ ++E +LPG+P+
Sbjct: 331 PSHTDKTVRGGISKVE-------FLPGQPV 353
>NCU07788.1 NCU07788.1 related to transcription activator amyR
[MIPS] (590 - 2892)
Length = 746
Score = 26.2 bits (56), Expect = 8.0
Identities = 15/40 (37%), Positives = 19/40 (47%)
Frame = -2
Query: 702 AAARAGTASRCTSPRCAGVLPARSCSSGSGLPCTSQRSPQ 583
A RA A +C G+ P R+C + S L CT PQ
Sbjct: 4 AVKRACDACHRRKVKCDGINPCRNCHA-SQLTCTYNAIPQ 42
>NCU02478.1 NCU02478.1 hypothetical protein (48783 - 41356)
Length = 2393
Score = 26.2 bits (56), Expect = 8.0
Identities = 11/37 (29%), Positives = 19/37 (50%)
Frame = +3
Query: 594 FGKCKEDPSHWNKISQGGLQRIEEKYTWKLYLPGRPL 704
+G +D W+ I QG + + + L++PG PL
Sbjct: 453 YGTMNQDVFRWSGIKQGTQRMLLGLFIMTLHMPGIPL 489
Database: /phillip/Ncr/Ncr_P
Posted date: May 20, 2002 12:05 PM
Number of letters in database: 3,158,374
Number of sequences in database: 6531
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4701505
Number of Sequences: 6531
Number of extensions: 113612
Number of successful extensions: 403
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 379
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 402
length of query: 235
length of database: 3,158,374
effective HSP length: 44
effective length of query: 190
effective length of database: 2,871,010
effective search space: 545491900
effective search space used: 545491900
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)