BLASTX 2.1.3 [Apr-1-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query=
/phillip/projects/Xu/Fgr-S/seq_dir/blast_NcrP/Fgr-S_1_F12_T7.seq
(251 letters)
Database: /phillip/Ncr/Ncr_P
6531 sequences; 3,158,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
NCU01562.1 NCU01562.1 related to 2, 4-dichlorophenoxyacetate dio... 26 1.9
NCU02223.1 NCU02223.1 hypothetical protein (19136 - 21773) 25 5.4
NCU02319.1 NCU02319.1 hypothetical protein (31163 - 34413) 25 5.4
NCU08865.1 NCU08865.1 predicted protein (5568 - 7051) 24 7.1
NCU01659.1 NCU01659.1 hypothetical protein ( (AL390189) conserve... 24 9.3
NCU01344.1 NCU01344.1 hypothetical protein (168799 - 166964) 24 9.3
>NCU01562.1 NCU01562.1 related to 2, 4-dichlorophenoxyacetate
dioxygenase [MIPS] (3876 - 506
Length = 356
Score = 26.2 bits (56), Expect = 1.9
Identities = 16/52 (30%), Positives = 23/52 (43%), Gaps = 9/52 (17%)
Frame = +3
Query: 6 GRPGRYYTHWEIFTVS---------FPPKSTKINLILLA*AVWPQELRMVPK 134
GR RYY H E+F S P S+ ++L A + W +L P+
Sbjct: 91 GRVPRYYPHLELFDASNLSDDGRAILDPSSSPRAMLLRANSSWHSDLAYNPR 142
>NCU02223.1 NCU02223.1 hypothetical protein (19136 - 21773)
Length = 836
Score = 24.6 bits (52), Expect = 5.4
Identities = 10/40 (25%), Positives = 19/40 (47%)
Frame = +3
Query: 132 KLKEQKKNEQHYLSLAEMLESVSSLLYDAQSSLQPRPRPR 251
KL ++K+ +Q YL + L +QP+ +P+
Sbjct: 89 KLNQKKQEQQRYLQQMQQLRQKQQQQQQQNQQVQPQGQPQ 128
>NCU02319.1 NCU02319.1 hypothetical protein (31163 - 34413)
Length = 1059
Score = 24.6 bits (52), Expect = 5.4
Identities = 10/19 (52%), Positives = 15/19 (78%)
Frame = +3
Query: 150 KNEQHYLSLAEMLESVSSL 206
KNE HY L++ L+SV++L
Sbjct: 776 KNETHYRVLSQALDSVNTL 794
>NCU08865.1 NCU08865.1 predicted protein (5568 - 7051)
Length = 404
Score = 24.3 bits (51), Expect = 7.1
Identities = 12/37 (32%), Positives = 20/37 (53%)
Frame = +3
Query: 21 YYTHWEIFTVSFPPKSTKINLILLA*AVWPQELRMVP 131
Y T W ++ + P ST + LLA +P+ +R +P
Sbjct: 239 YITRWTLYPLPLPSPSTPAHRTLLALLSFPR-IRTLP 274
>NCU01659.1 NCU01659.1 hypothetical protein ( (AL390189) conserved
hypothetical protein [Neu
Length = 1226
Score = 23.9 bits (50), Expect = 9.3
Identities = 14/28 (50%), Positives = 16/28 (57%)
Frame = +3
Query: 138 KEQKKNEQHYLSLAEMLESVSSLLYDAQ 221
KEQK N QHY +M + SL YD Q
Sbjct: 1036 KEQKANGQHY--AFDMDGFIRSLPYDQQ 1061
>NCU01344.1 NCU01344.1 hypothetical protein (168799 - 166964)
Length = 532
Score = 23.9 bits (50), Expect = 9.3
Identities = 11/39 (28%), Positives = 21/39 (53%)
Frame = +3
Query: 132 KLKEQKKNEQHYLSLAEMLESVSSLLYDAQSSLQPRPRP 248
K+K K+ ++ + +LA+ L + L D+ + P P P
Sbjct: 385 KIKRLKEEKKAWQALAKPLPDLEPLYPDSDPAKAPLPEP 423
Database: /phillip/Ncr/Ncr_P
Posted date: May 20, 2002 12:05 PM
Number of letters in database: 3,158,374
Number of sequences in database: 6531
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1499541
Number of Sequences: 6531
Number of extensions: 25156
Number of successful extensions: 55
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 55
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 55
length of query: 83
length of database: 3,158,374
effective HSP length: 39
effective length of query: 44
effective length of database: 2,903,665
effective search space: 127761260
effective search space used: 127761260
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)