BLASTX 2.1.3 [Apr-1-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query=
/phillip/projects/Xu/Fgr-S/seq_dir/blast_NcrP/Fgr-S_1_G01_T7.seq
         (180 letters)

Database: /phillip/Ncr/Ncr_P
           6531 sequences; 3,158,374 total letters

Searching..................................................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

NCU00625.1 NCU00625.1 hypothetical protein (153946 - 167238)           24  5.1
NCU06862.1 NCU06862.1 predicted protein (16576 - 14426)                24  5.1
NCU01394.1 NCU01394.1 predicted protein (10941 - 6982)                 23  6.7
NCU00068.1 NCU00068.1 predicted protein (27370 - 23868)                23  6.7
NCU00348.1 NCU00348.1 hypothetical protein (470655 - 470052)           23  8.7

>NCU00625.1 NCU00625.1 hypothetical protein (153946 - 167238)
          Length = 3409

 Score = 23.9 bits (50), Expect = 5.1
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = -2

Query: 155  CKVSKIISFTTCRTEHT 105
            C+V ++ISF  C T++T
Sbjct: 1149 CRVIELISFVPCATDNT 1165



>NCU06862.1 NCU06862.1 predicted protein (16576 - 14426)
          Length = 686

 Score = 23.9 bits (50), Expect = 5.1
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -1

Query: 63  KIEPSTLERQQIPAKPRP 10
           K+EP   ER  +P+ PRP
Sbjct: 283 KVEPKGEERSGMPSTPRP 300



>NCU01394.1 NCU01394.1 predicted protein (10941 - 6982)
          Length = 1266

 Score = 23.5 bits (49), Expect = 6.7
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +1

Query: 94  SRGGVCSVLQVVNEMILLTLQVPARAAA 177
           S  G  SV +   EM+LLT+ VP+  ++
Sbjct: 566 SIAGASSVAETEIEMLLLTVDVPSNRSS 593



>NCU00068.1 NCU00068.1 predicted protein (27370 - 23868)
          Length = 1115

 Score = 23.5 bits (49), Expect = 6.7
 Identities = 10/32 (31%), Positives = 17/32 (52%), Gaps = 2/32 (6%)
 Frame = -1

Query: 90  MW*TIQTNKKIEPST--LERQQIPAKPRPRPR 1
           +W T+Q   +    +  ++R   P  PRPRP+
Sbjct: 445 LWTTLQQTPRGSDGSQDMDRNYTPVPPRPRPQ 476



>NCU00348.1 NCU00348.1 hypothetical protein (470655 - 470052)
          Length = 112

 Score = 23.1 bits (48), Expect = 8.7
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -2

Query: 143 KIISFTTCRTEHTPPRDICGK 81
           KII+  + RT+  P   +CGK
Sbjct: 87  KIINLGSSRTDRCPGMGLCGK 107



  Database: /phillip/Ncr/Ncr_P
    Posted date:  May 20, 2002 12:05 PM
  Number of letters in database: 3,158,374
  Number of sequences in database:  6531
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1145764
Number of Sequences: 6531
Number of extensions: 17483
Number of successful extensions: 35
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 35
length of query: 60
length of database: 3,158,374
effective HSP length: 35
effective length of query: 24
effective length of database: 2,929,789
effective search space: 70314936
effective search space used: 70314936
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 48 (23.1 bits)