BLASTX 2.1.3 [Apr-1-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query=
/phillip/projects/Xu/Fgr-S/seq_dir/blast_NcrP/Fgr-S_1_G04_T7.seq
(194 letters)
Database: /phillip/Ncr/Ncr_P
6531 sequences; 3,158,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
NCU01868.1 NCU01868.1 hypothetical protein (39082 - 40715) 28 0.35
NCU01543.1 NCU01543.1 hypothetical protein (19493 - 22219) 27 0.60
NCU01387.1 NCU01387.1 hypothetical protein ( (AL451020) conserve... 24 5.0
NCU02557.1 NCU02557.1 predicted protein (183024 - 182694) 23 6.6
NCU06352.1 NCU06352.1 hypothetical protein (66037 - 62301) 23 8.6
NCU08792.1 NCU08792.1 predicted protein (43282 - 45807) 23 8.6
>NCU01868.1 NCU01868.1 hypothetical protein (39082 - 40715)
Length = 523
Score = 27.7 bits (60), Expect = 0.35
Identities = 13/25 (52%), Positives = 16/25 (64%), Gaps = 3/25 (12%)
Frame = +1
Query: 52 SGSYMIGHGTLFFQ---RDNDQTMD 117
SG Y+I +GT FFQ DND+ D
Sbjct: 316 SGIYLINYGTYFFQLAGLDNDEAFD 340
>NCU01543.1 NCU01543.1 hypothetical protein (19493 - 22219)
Length = 793
Score = 26.9 bits (58), Expect = 0.60
Identities = 10/25 (40%), Positives = 19/25 (76%)
Frame = +1
Query: 43 YYSSGSYMIGHGTLFFQRDNDQTMD 117
+Y +GS+++ +GTL Q D+DQ ++
Sbjct: 511 WYDNGSHVVHNGTLRIQFDSDQFIE 535
>NCU01387.1 NCU01387.1 hypothetical protein ( (AL451020) conserved
hypothetical protein [Neu
Length = 915
Score = 23.9 bits (50), Expect = 5.0
Identities = 9/23 (39%), Positives = 16/23 (69%)
Frame = +2
Query: 95 GTTTKPWTKNTGFHISKTKVLFF 163
GTTT P + +++ +TK+L+F
Sbjct: 672 GTTTTPARHQSTYYLLRTKLLWF 694
>NCU02557.1 NCU02557.1 predicted protein (183024 - 182694)
Length = 40
Score = 23.5 bits (49), Expect = 6.6
Identities = 9/19 (47%), Positives = 12/19 (62%)
Frame = +3
Query: 63 HDRAWHLIFSTGQRPNHGL 119
H R+ LI+S G PN G+
Sbjct: 13 HQRSISLIYSVGASPNSGM 31
>NCU06352.1 NCU06352.1 hypothetical protein (66037 - 62301)
Length = 1094
Score = 23.1 bits (48), Expect = 8.6
Identities = 8/18 (44%), Positives = 13/18 (71%)
Frame = -2
Query: 133 KPRVFSPWFGRCPVEKIR 80
+PRVF PW R ++++R
Sbjct: 402 QPRVFVPWEKRSKLDQLR 419
>NCU08792.1 NCU08792.1 predicted protein (43282 - 45807)
Length = 734
Score = 23.1 bits (48), Expect = 8.6
Identities = 9/24 (37%), Positives = 11/24 (45%)
Frame = -2
Query: 100 CPVEKIRCHALSCKNPNYNSSNMG 29
C + RC C NP N S+ G
Sbjct: 221 CSEHEYRCRIDGCPNPLVNGSSTG 244
Database: /phillip/Ncr/Ncr_P
Posted date: May 20, 2002 12:05 PM
Number of letters in database: 3,158,374
Number of sequences in database: 6531
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1158718
Number of Sequences: 6531
Number of extensions: 18113
Number of successful extensions: 34
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 34
length of query: 64
length of database: 3,158,374
effective HSP length: 40
effective length of query: 24
effective length of database: 2,897,134
effective search space: 69531216
effective search space used: 69531216
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 48 (23.1 bits)