BLASTX 2.1.3 [Apr-1-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query=
/phillip/projects/Xu/Fgr-S/seq_dir/blast_NcrP/Fgr-S_1_G05_T7.seq
         (608 letters)

Database: /phillip/Ncr/Ncr_P
           6531 sequences; 3,158,374 total letters

Searching..................................................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

NCU09085.1 NCU09085.1 hypothetical protein (60949 - 62601)             27  4.0
NCU01951.1 NCU01951.1 hypothetical protein (41396 - 47277)             27  5.2
NCU08543.1 NCU08543.1 predicted protein (54993 - 57294)                26  8.8

>NCU09085.1 NCU09085.1 hypothetical protein (60949 - 62601)
          Length = 550

 Score = 26.9 bits (58), Expect = 4.0
 Identities = 20/55 (36%), Positives = 23/55 (41%), Gaps = 2/55 (3%)
 Frame = +2

Query: 296 LHVSPGSPAPSVCSSWLA--GRIRYAIKQLHRS*QHRWRRQAFSRWPQASSRPLL 454
           L     +PA S  S  LA    + YA+ Q      H    Q   RWP ASS P L
Sbjct: 302 LRAMTSTPAVSAVSCLLAKGSSMGYAMHQA----SHATAAQVSDRWPSASSPPYL 352



>NCU01951.1 NCU01951.1 hypothetical protein (41396 - 47277)
          Length = 1926

 Score = 26.6 bits (57), Expect = 5.2
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -3

Query: 351 PASHEEQTDGAGEPGETCRVPSTDHQRWLE 262
           P +  EQT GAG+PG   ++ S   +R  E
Sbjct: 529 PRNAHEQTQGAGQPGPQRKLQSNPPERVYE 558



>NCU08543.1 NCU08543.1 predicted protein (54993 - 57294)
          Length = 706

 Score = 25.8 bits (55), Expect = 8.8
 Identities = 13/25 (52%), Positives = 14/25 (56%), Gaps = 6/25 (24%)
 Frame = +3

Query: 36  PNTENRRDTTT------PGHRVRRP 92
           PNT  +RD TT      PG R RRP
Sbjct: 97  PNTSKKRDGTTEGSHAYPGSRYRRP 121



  Database: /phillip/Ncr/Ncr_P
    Posted date:  May 20, 2002 12:05 PM
  Number of letters in database: 3,158,374
  Number of sequences in database:  6531
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3498922
Number of Sequences: 6531
Number of extensions: 67911
Number of successful extensions: 243
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 234
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 243
length of query: 202
length of database: 3,158,374
effective HSP length: 42
effective length of query: 160
effective length of database: 2,884,072
effective search space: 461451520
effective search space used: 461451520
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)