BLASTX 2.1.3 [Apr-1-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query=
/phillip/projects/Xu/Fgr-S/seq_dir/blast_NcrP/Fgr-S_1_G06_T7.seq
(402 letters)
Database: /phillip/Ncr/Ncr_P
6531 sequences; 3,158,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
NCU00245.1 NCU00245.1 predicted protein (90346 - 91556) 27 2.2
NCU02281.1 NCU02281.1 hypothetical protein (119700 - 123176) 27 2.2
NCU01780.1 NCU01780.1 predicted protein (146676 - 147847) 27 2.2
NCU02203.1 NCU02203.1 hypothetical protein (11788 - 9198) 27 2.9
NCU02724.1 NCU02724.1 hypothetical protein (44368 - 45966) 26 3.8
NCU07557.1 NCU07557.1 predicted protein (15329 - 11663) 26 5.0
NCU01465.1 NCU01465.1 hypothetical protein (11302 - 15830) 25 6.5
NCU07532.1 NCU07532.1 predicted protein (35712 - 33691) 25 6.5
NCU08658.1 NCU08658.1 hypothetical protein (35882 - 32296) 25 8.5
NCU08905.1 NCU08905.1 hypothetical protein (8498 - 10347) 25 8.5
NCU01353.1 NCU01353.1 hypothetical protein (199494 - 201795) 25 8.5
>NCU00245.1 NCU00245.1 predicted protein (90346 - 91556)
Length = 275
Score = 26.9 bits (58), Expect = 2.2
Identities = 26/112 (23%), Positives = 46/112 (40%)
Frame = -3
Query: 343 HMMCRQTGKDEPTHQSSKLNPAKQVMVTMPIYMSQNPAPSSILAEAPTMSRPCPRDCT*G 164
H+ R+ Q+S +P + T S++PA ++ + T + T
Sbjct: 24 HIHVREPSSSTADLQTSSCHPVTIITPTSSSPSSESPAENTTTTSS-TDDDDFQKGFTPR 82
Query: 163 AGACVTGHGHTP*LTSDTKQKRHAPPTYRASCLLLVLQLAGSGARRRGTSAA 8
+ + GH + L Q+ P Y A L + +AG+GA GTS++
Sbjct: 83 LPSALQGHKNWTPLPGKENQRWEHCPGYLAKSRALAVAVAGAGA-GAGTSSS 133
>NCU02281.1 NCU02281.1 hypothetical protein (119700 - 123176)
Length = 1080
Score = 26.9 bits (58), Expect = 2.2
Identities = 15/48 (31%), Positives = 22/48 (45%)
Frame = -3
Query: 319 KDEPTHQSSKLNPAKQVMVTMPIYMSQNPAPSSILAEAPTMSRPCPRD 176
+D+PT N K I M+ PAPS+ +A++ PRD
Sbjct: 614 EDDPTFIVVDCNAGKGESTGDDITMTDEPAPSTPVADSANTGNDRPRD 661
>NCU01780.1 NCU01780.1 predicted protein (146676 - 147847)
Length = 368
Score = 26.9 bits (58), Expect = 2.2
Identities = 18/67 (26%), Positives = 27/67 (39%)
Frame = -3
Query: 376 PIMRDMNTYELHMMCRQTGKDEPTHQSSKLNPAKQVMVTMPIYMSQNPAPSSILAEAPTM 197
P +D + + Q K EPT+ K N +Q ++Q PA +P+
Sbjct: 53 PSSKDQSDIIIQPQIEQEPKKEPTYVMRKPNDQQQEAQAAEPTVNQEPA-------SPSR 105
Query: 196 SRPCPRD 176
RP P D
Sbjct: 106 KRPSPGD 112
>NCU02203.1 NCU02203.1 hypothetical protein (11788 - 9198)
Length = 838
Score = 26.6 bits (57), Expect = 2.9
Identities = 12/36 (33%), Positives = 16/36 (44%), Gaps = 2/36 (5%)
Frame = +3
Query: 42 PASWRTSSKQLAR*VGGA--CLFCLVSLVSHGVCPC 143
P W+T +Q A+ A C C + H V PC
Sbjct: 73 PTQWKTQQQQEAQDDDDAEVCFICANPITHHSVAPC 108
>NCU02724.1 NCU02724.1 hypothetical protein (44368 - 45966)
Length = 532
Score = 26.2 bits (56), Expect = 3.8
Identities = 13/29 (44%), Positives = 16/29 (54%)
Frame = +3
Query: 165 PHVQSRGHGRDMVGASAKIDDGAGFCDMY 251
PHV +GHG+D G + D G F D Y
Sbjct: 68 PHVGMQGHGQDFGGMN---DVGMNFPDSY 93
>NCU07557.1 NCU07557.1 predicted protein (15329 - 11663)
Length = 1141
Score = 25.8 bits (55), Expect = 5.0
Identities = 11/41 (26%), Positives = 20/41 (47%)
Frame = -3
Query: 328 QTGKDEPTHQSSKLNPAKQVMVTMPIYMSQNPAPSSILAEA 206
Q + +P QS +NP + +P + P PS+I + +
Sbjct: 764 QQAQPQPPSQSQPINPPRPPTPPLPCSLYSPPPPSTIYSSS 804
>NCU01465.1 NCU01465.1 hypothetical protein (11302 - 15830)
Length = 1448
Score = 25.4 bits (54), Expect = 6.5
Identities = 11/24 (45%), Positives = 15/24 (61%)
Frame = -2
Query: 248 HVAKSGAIVDLS*STNHVTPVPAR 177
HVA+ + S ST H+TP P+R
Sbjct: 278 HVAEGSNALARSRSTTHLTPTPSR 301
>NCU07532.1 NCU07532.1 predicted protein (35712 - 33691)
Length = 502
Score = 25.4 bits (54), Expect = 6.5
Identities = 10/21 (47%), Positives = 12/21 (56%)
Frame = +3
Query: 150 THAPAPHVQSRGHGRDMVGAS 212
TH P+PH G G +GAS
Sbjct: 151 THVPSPHAHGGGGGGSGLGAS 171
>NCU08658.1 NCU08658.1 hypothetical protein (35882 - 32296)
Length = 1120
Score = 25.0 bits (53), Expect = 8.5
Identities = 14/37 (37%), Positives = 17/37 (45%), Gaps = 3/37 (8%)
Frame = -3
Query: 328 QTGKDEPTHQSSKLNPAKQVMVTMPIYM---SQNPAP 227
QT PTHQS P+ V V+ Y Q P+P
Sbjct: 1061 QTHHSHPTHQSKPSPPSSAVGVSQQAYQRWYQQAPSP 1097
>NCU08905.1 NCU08905.1 hypothetical protein (8498 - 10347)
Length = 532
Score = 25.0 bits (53), Expect = 8.5
Identities = 20/71 (28%), Positives = 31/71 (43%)
Frame = -3
Query: 346 LHMMCRQTGKDEPTHQSSKLNPAKQVMVTMPIYMSQNPAPSSILAEAPTMSRPCPRDCT* 167
LH + T +P H+ +K+N + VT+ I + +S+ A P SR R
Sbjct: 178 LHTIYTYTLAKDPFHEGTKVNLWSVIEVTIAI------SCASVSALKPMFSRRQRRLTLG 231
Query: 166 GAGACVTGHGH 134
G GHG+
Sbjct: 232 AIGGRSGGHGY 242
>NCU01353.1 NCU01353.1 hypothetical protein (199494 - 201795)
Length = 725
Score = 25.0 bits (53), Expect = 8.5
Identities = 13/44 (29%), Positives = 22/44 (49%), Gaps = 1/44 (2%)
Frame = +3
Query: 108 LVSLVSHGVCPCPVTHAPAP-HVQSRGHGRDMVGASAKIDDGAG 236
+ S+++ CPVT PAP + G+G +V + +G G
Sbjct: 534 VTSVIAISTTVCPVTQHPAPTNAPGGGNGVPVVSGGSNNGNGNG 577
Database: /phillip/Ncr/Ncr_P
Posted date: May 20, 2002 12:05 PM
Number of letters in database: 3,158,374
Number of sequences in database: 6531
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2637065
Number of Sequences: 6531
Number of extensions: 59975
Number of successful extensions: 193
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 186
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 193
length of query: 134
length of database: 3,158,374
effective HSP length: 42
effective length of query: 91
effective length of database: 2,884,072
effective search space: 262450552
effective search space used: 262450552
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)