BLASTX 2.1.3 [Apr-1-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query=
/phillip/projects/Xu/Fgr-S/seq_dir/blast_NcrP/Fgr-S_1_G08_T7.seq
(186 letters)
Database: /phillip/Ncr/Ncr_P
6531 sequences; 3,158,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
NCU00914.1 NCU00914.1 hypothetical protein (238 - 3858) 27 0.60
NCU07990.1 NCU07990.1 predicted protein (62309 - 59686) 27 0.60
NCU00486.1 NCU00486.1 predicted protein (25241 - 28163) 27 0.78
NCU07924.1 NCU07924.1 predicted protein (78378 - 83100) 26 1.0
NCU01078.1 NCU01078.1 hypothetical protein (223720 - 222320) 26 1.0
NCU08869.1 NCU08869.1 predicted protein (163 - 3814) 25 1.7
NCU00241.1 NCU00241.1 predicted protein (78229 - 75470) 25 1.7
NCU01567.1 NCU01567.1 hypothetical protein (19844 - 21762) 25 2.3
NCU02263.1 NCU02263.1 hypothetical protein (59666 - 58400) 25 2.3
NCU00344.1 NCU00344.1 hypothetical protein (460479 - 456913) 25 3.0
NCU07922.1 NCU07922.1 hypothetical protein (69808 - 73431) 25 3.0
NCU06382.1 NCU06382.1 hypothetical protein (16097 - 24079) 24 3.9
NCU08084.1 NCU08084.1 predicted protein (118835 - 120835) 24 3.9
NCU09482.1 NCU09482.1 predicted protein (17414 - 13175) 24 3.9
NCU08417.1 NCU08417.1 predicted protein (56918 - 52131) 24 3.9
NCU06772.1 NCU06772.1 predicted protein (5402 - 6607) 24 5.1
NCU01613.1 NCU01613.1 related to SHK1 KINASE-BINDING protein [MI... 24 5.1
NCU09370.1 NCU09370.1 predicted protein (3137 - 6095) 23 6.6
NCU06851.1 NCU06851.1 predicted protein (41561 - 38745) 23 6.6
NCU06498.1 NCU06498.1 hypothetical protein (88835 - 89933) 23 6.6
NCU07637.1 NCU07637.1 predicted protein (8632 - 11491) 23 6.6
NCU07012.1 NCU07012.1 hypothetical protein (17622 - 13911) 23 6.6
NCU06805.1 NCU06805.1 hypothetical protein ( related to 50S RIBO... 23 6.6
NCU00929.1 NCU00929.1 predicted protein (63526 - 67488) 23 8.7
NCU00505.1 NCU00505.1 hypothetical protein (35471 - 34803) 23 8.7
NCU09213.1 NCU09213.1 predicted protein (93205 - 94467) 23 8.7
NCU01104.1 NCU01104.1 hypothetical protein (305349 - 302576) 23 8.7
>NCU00914.1 NCU00914.1 hypothetical protein (238 - 3858)
Length = 1168
Score = 26.9 bits (58), Expect = 0.60
Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Frame = +3
Query: 27 RPRSWTMPTR-SPRMAARTRLSQPAPPPLHESMTDR 131
RP ++ PT P M+ART +Q P P+ +D+
Sbjct: 65 RPSAYDQPTGLEPHMSARTAFAQSIPAPVTSIASDQ 100
>NCU07990.1 NCU07990.1 predicted protein (62309 - 59686)
Length = 855
Score = 26.9 bits (58), Expect = 0.60
Identities = 9/23 (39%), Positives = 15/23 (65%)
Frame = +3
Query: 39 WTMPTRSPRMAARTRLSQPAPPP 107
+ +PT++PR+ QP+PPP
Sbjct: 73 YDIPTKAPRLVPADEPCQPSPPP 95
>NCU00486.1 NCU00486.1 predicted protein (25241 - 28163)
Length = 956
Score = 26.6 bits (57), Expect = 0.78
Identities = 12/24 (50%), Positives = 17/24 (70%)
Frame = +3
Query: 36 SWTMPTRSPRMAARTRLSQPAPPP 107
SW+ P+ R ++R R+SQP PPP
Sbjct: 250 SWSDPSGIVRRSSR-RISQPPPPP 272
>NCU07924.1 NCU07924.1 predicted protein (78378 - 83100)
Length = 1435
Score = 26.2 bits (56), Expect = 1.0
Identities = 11/29 (37%), Positives = 16/29 (54%)
Frame = +3
Query: 30 PRSWTMPTRSPRMAARTRLSQPAPPPLHE 116
P + T P R+P M A +R PPP ++
Sbjct: 1170 PPARTSPLRTPHMRAPSRSPYRTPPPAYQ 1198
>NCU01078.1 NCU01078.1 hypothetical protein (223720 - 222320)
Length = 435
Score = 26.2 bits (56), Expect = 1.0
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = +3
Query: 24 ARPRSWTMPTRSPRMAARTRLSQPAPP 104
A P + MP +P A+ R S PAPP
Sbjct: 2 AEPLNTPMPASTPVPASTPRSSSPAPP 28
>NCU08869.1 NCU08869.1 predicted protein (163 - 3814)
Length = 1117
Score = 25.4 bits (54), Expect = 1.7
Identities = 15/28 (53%), Positives = 17/28 (60%)
Frame = +3
Query: 27 RPRSWTMPTRSPRMAARTRLSQPAPPPL 110
RPRS+T T S R + T S APPPL
Sbjct: 797 RPRSYTTRTVSERSSYFT--SNEAPPPL 822
>NCU00241.1 NCU00241.1 predicted protein (78229 - 75470)
Length = 919
Score = 25.4 bits (54), Expect = 1.7
Identities = 16/35 (45%), Positives = 18/35 (50%), Gaps = 1/35 (2%)
Frame = +3
Query: 24 ARPRSWTMPTRSPR-MAARTRLSQPAPPPLHESMT 125
A P PT+SP AART +PAPP S T
Sbjct: 598 ASPAPPHSPTKSPNPAAARTASPKPAPPRPASSAT 632
>NCU01567.1 NCU01567.1 hypothetical protein (19844 - 21762)
Length = 448
Score = 25.0 bits (53), Expect = 2.3
Identities = 11/20 (55%), Positives = 12/20 (60%)
Frame = +3
Query: 48 PTRSPRMAARTRLSQPAPPP 107
PT S A +R S PAPPP
Sbjct: 195 PTTSLNQAVLSRSSPPAPPP 214
>NCU02263.1 NCU02263.1 hypothetical protein (59666 - 58400)
Length = 334
Score = 25.0 bits (53), Expect = 2.3
Identities = 13/36 (36%), Positives = 16/36 (44%), Gaps = 2/36 (5%)
Frame = +3
Query: 15 EVWARPRSWTMPTRSPRM--AARTRLSQPAPPPLHE 116
E WARP W +P AA ++ AP P E
Sbjct: 283 EQWARPAKWEKKADAPAAAPAAAPAATEAAPAPAAE 318
>NCU00344.1 NCU00344.1 hypothetical protein (460479 - 456913)
Length = 874
Score = 24.6 bits (52), Expect = 3.0
Identities = 10/17 (58%), Positives = 11/17 (63%)
Frame = +3
Query: 57 SPRMAARTRLSQPAPPP 107
SP+ R R S PAPPP
Sbjct: 33 SPKPVPRDRSSPPAPPP 49
>NCU07922.1 NCU07922.1 hypothetical protein (69808 - 73431)
Length = 1056
Score = 24.6 bits (52), Expect = 3.0
Identities = 10/19 (52%), Positives = 15/19 (78%)
Frame = +1
Query: 25 QGQGAGPCLQEARGWQQEQ 81
QGQG+GP L+E G ++E+
Sbjct: 992 QGQGSGPRLKEDDGEEEEK 1010
>NCU06382.1 NCU06382.1 hypothetical protein (16097 - 24079)
Length = 2087
Score = 24.3 bits (51), Expect = 3.9
Identities = 9/26 (34%), Positives = 13/26 (49%)
Frame = +3
Query: 30 PRSWTMPTRSPRMAARTRLSQPAPPP 107
PR W P + +MA +S+ P P
Sbjct: 168 PREWGPPPATEKMAVYKHISEAQPTP 193
>NCU08084.1 NCU08084.1 predicted protein (118835 - 120835)
Length = 368
Score = 24.3 bits (51), Expect = 3.9
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = +2
Query: 74 KNKA*SARSPTPP*EHDRPFSML 142
K A A+SPTPP E R +S L
Sbjct: 240 KGSAVEAKSPTPPGEEPRAWSGL 262
>NCU09482.1 NCU09482.1 predicted protein (17414 - 13175)
Length = 1395
Score = 24.3 bits (51), Expect = 3.9
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = +3
Query: 6 VAAEVWARPRSWTMPTRSPRMAARTRLSQPAPPP 107
VA+ A PR ++SPR + +L P PPP
Sbjct: 300 VASPRIASPRLPPPQSQSPRTPSTPQLPIPTPPP 333
>NCU08417.1 NCU08417.1 predicted protein (56918 - 52131)
Length = 1578
Score = 24.3 bits (51), Expect = 3.9
Identities = 18/51 (35%), Positives = 22/51 (42%)
Frame = +1
Query: 25 QGQGAGPCLQEARGWQQEQGLVSPLPHPSMRA*PTV*HANCYHYHLVPARA 177
Q Q GP Q+ QQ+Q PHPS + P H Y + P RA
Sbjct: 227 QQQHPGPHQQQ----QQQQQQPPQPPHPSQQGPPPNAHQMGGSYGIPPPRA 273
>NCU06772.1 NCU06772.1 predicted protein (5402 - 6607)
Length = 401
Score = 23.9 bits (50), Expect = 5.1
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +3
Query: 48 PTRSPRMAARTRLSQPAPPPLHESMTDRL 134
PT S + + + LS P+ PP+ TDRL
Sbjct: 218 PTPSTQGWSSSPLSSPSTPPVPTVPTDRL 246
>NCU01613.1 NCU01613.1 related to SHK1 KINASE-BINDING protein [MIPS]
(63022 - 65607)
Length = 718
Score = 23.9 bits (50), Expect = 5.1
Identities = 11/24 (45%), Positives = 14/24 (57%)
Frame = +1
Query: 16 RYGQGQGAGPCLQEARGWQQEQGL 87
+YGQ +G LQE W E+GL
Sbjct: 37 QYGQILDSGSHLQEREQWVTERGL 60
>NCU09370.1 NCU09370.1 predicted protein (3137 - 6095)
Length = 924
Score = 23.5 bits (49), Expect = 6.6
Identities = 10/20 (50%), Positives = 11/20 (55%)
Frame = +3
Query: 42 TMPTRSPRMAARTRLSQPAP 101
T P PR RLSQP+P
Sbjct: 225 TQPGLGPRSLTGNRLSQPSP 244
>NCU06851.1 NCU06851.1 predicted protein (41561 - 38745)
Length = 938
Score = 23.5 bits (49), Expect = 6.6
Identities = 13/37 (35%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
Frame = +3
Query: 27 RPRSWTMPTRSPRM-AARTRLSQPAPPPLHESMTDRL 134
R R + R P M + RL P PPP H + R+
Sbjct: 898 RDRDMGIGGRDPPMRSVDLRLPLPPPPPHHHGLPPRM 934
>NCU06498.1 NCU06498.1 hypothetical protein (88835 - 89933)
Length = 344
Score = 23.5 bits (49), Expect = 6.6
Identities = 14/43 (32%), Positives = 18/43 (41%)
Frame = +2
Query: 2 RGRGRGMGKAKELDHAYKKPEDGSKNKA*SARSPTPP*EHDRP 130
RGRGRG G+ D + + S PP + DRP
Sbjct: 194 RGRGRGFGR-----------RDRDEGRLNSRERRAPPRDWDRP 225
>NCU07637.1 NCU07637.1 predicted protein (8632 - 11491)
Length = 872
Score = 23.5 bits (49), Expect = 6.6
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = +3
Query: 6 VAAEVWARPRSWTMPTRSPRMAARTRLSQPAPP 104
+A V+A + T P+ + R A + L QP PP
Sbjct: 499 LAMPVFAARPTRTQPSPATRPHASSGLKQPTPP 531
>NCU07012.1 NCU07012.1 hypothetical protein (17622 - 13911)
Length = 1200
Score = 23.5 bits (49), Expect = 6.6
Identities = 11/26 (42%), Positives = 13/26 (49%)
Frame = +3
Query: 24 ARPRSWTMPTRSPRMAARTRLSQPAP 101
A PRS +P SP +RL P P
Sbjct: 695 ASPRSPPLPPASPSAQRESRLPPPIP 720
>NCU06805.1 NCU06805.1 hypothetical protein ( related to 50S
RIBOSOMAL PROTEIN L2 [imported]
Length = 152
Score = 23.5 bits (49), Expect = 6.6
Identities = 7/14 (50%), Positives = 9/14 (64%)
Frame = -1
Query: 45 WSSSLALPIPRPRP 4
W L P+PRP+P
Sbjct: 125 WGQCLFFPVPRPQP 138
>NCU00929.1 NCU00929.1 predicted protein (63526 - 67488)
Length = 1320
Score = 23.1 bits (48), Expect = 8.7
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = +3
Query: 51 TRSPRMAARTRLSQPAPPPL 110
+ S R+A+R +SQP PP L
Sbjct: 224 SESRRIASRRIVSQPVPPRL 243
>NCU00505.1 NCU00505.1 hypothetical protein (35471 - 34803)
Length = 123
Score = 23.1 bits (48), Expect = 8.7
Identities = 8/11 (72%), Positives = 10/11 (90%)
Frame = +2
Query: 2 RGRGRGMGKAK 34
RGRGRGMG+ +
Sbjct: 108 RGRGRGMGRGR 118
>NCU09213.1 NCU09213.1 predicted protein (93205 - 94467)
Length = 420
Score = 23.1 bits (48), Expect = 8.7
Identities = 11/31 (35%), Positives = 16/31 (51%)
Frame = +1
Query: 19 YGQGQGAGPCLQEARGWQQEQGLVSPLPHPS 111
Y G GAG + E+GLV+ +P P+
Sbjct: 72 YTHGPGAGGSVWPVTTTCDEEGLVTAMPIPT 102
>NCU01104.1 NCU01104.1 hypothetical protein (305349 - 302576)
Length = 678
Score = 23.1 bits (48), Expect = 8.7
Identities = 10/24 (41%), Positives = 14/24 (57%)
Frame = +2
Query: 2 RGRGRGMGKAKELDHAYKKPEDGS 73
RGRG G + + ++KKP D S
Sbjct: 631 RGRGGPGGAGGDRNSSFKKPRDDS 654
Database: /phillip/Ncr/Ncr_P
Posted date: May 20, 2002 12:05 PM
Number of letters in database: 3,158,374
Number of sequences in database: 6531
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1545759
Number of Sequences: 6531
Number of extensions: 34189
Number of successful extensions: 174
Number of sequences better than 10.0: 54
Number of HSP's better than 10.0 without gapping: 159
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 173
length of query: 62
length of database: 3,158,374
effective HSP length: 37
effective length of query: 24
effective length of database: 2,916,727
effective search space: 70001448
effective search space used: 70001448
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 48 (23.1 bits)