BLASTX 2.1.3 [Apr-1-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query=
/phillip/projects/Xu/Fgr-S/seq_dir/blast_NcrP/Fgr-S_1_G09_T7.seq
         (150 letters)

Database: /phillip/Ncr/Ncr_P
           6531 sequences; 3,158,374 total letters

Searching..................................................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

NCU07511.1 NCU07511.1 hypothetical protein (4497 - 6155)               27  0.62
NCU06459.1 NCU06459.1 hypothetical protein (157157 - 159553)           24  5.2
NCU08892.1 NCU08892.1 predicted protein (43324 - 44556)                23  8.9

>NCU07511.1 NCU07511.1 hypothetical protein (4497 - 6155)
          Length = 477

 Score = 26.9 bits (58), Expect = 0.62
 Identities = 8/16 (50%), Positives = 13/16 (81%)
 Frame = +2

Query: 59  TTSIFSRYNTWIAFIS 106
           +TS+F RYNTW+  ++
Sbjct: 429 STSLFERYNTWVEIVT 444



>NCU06459.1 NCU06459.1 hypothetical protein (157157 - 159553)
          Length = 798

 Score = 23.9 bits (50), Expect = 5.2
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = -3

Query: 97  CYPCIVSGKNAGSFFSLETLEGLPGH 20
           C+   +    A SFF+L  L+GL  H
Sbjct: 464 CFVTFIDPTAAASFFALSNLQGLMIH 489



>NCU08892.1 NCU08892.1 predicted protein (43324 - 44556)
          Length = 410

 Score = 23.1 bits (48), Expect = 8.9
 Identities = 7/12 (58%), Positives = 10/12 (83%)
 Frame = +1

Query: 67  HFFPIQYMDSIY 102
           HF P+ Y+DS+Y
Sbjct: 100 HFSPLAYLDSLY 111



  Database: /phillip/Ncr/Ncr_P
    Posted date:  May 20, 2002 12:05 PM
  Number of letters in database: 3,158,374
  Number of sequences in database:  6531
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 847895
Number of Sequences: 6531
Number of extensions: 10838
Number of successful extensions: 18
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of query: 50
length of database: 3,158,374
effective HSP length: 25
effective length of query: 24
effective length of database: 2,995,099
effective search space: 71882376
effective search space used: 71882376
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 48 (23.1 bits)