BLASTX 2.1.3 [Apr-1-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query=
/phillip/projects/Xu/Fgr-S/seq_dir/blast_NcrP/Fgr-S_1_G10_T7.seq
(484 letters)
Database: /phillip/Ncr/Ncr_P
6531 sequences; 3,158,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
NCU00117.1 NCU00117.1 hypothetical protein (118266 - 115350) 27 2.9
NCU00274.1 NCU00274.1 hypothetical protein (191786 - 200784) 27 2.9
NCU01901.1 NCU01901.1 hypothetical protein (153797 - 150216) 27 3.8
NCU00551.1 NCU00551.1 hypothetical protein (24876 - 32263) 26 5.0
NCU06549.1 NCU06549.1 hypothetical protein ( (AF309689) Sno-type... 26 5.0
NCU06774.1 NCU06774.1 hypothetical protein (14045 - 10776) 26 5.0
NCU00526.1 NCU00526.1 hypothetical protein (7709 - 5720) 26 5.0
NCU07447.1 NCU07447.1 hypothetical protein (78481 - 80469) 26 5.0
NCU01268.1 NCU01268.1 hypothetical protein (13467 - 14843) 25 8.5
NCU02565.1 NCU02565.1 hypothetical protein (203290 - 205060) 25 8.5
>NCU00117.1 NCU00117.1 hypothetical protein (118266 - 115350)
Length = 758
Score = 26.9 bits (58), Expect = 2.9
Identities = 14/51 (27%), Positives = 24/51 (46%)
Frame = +2
Query: 44 IVKGKSRLGSIVHNKTASVLCLTTLNNEDKLEFNKILEAIKANFNDKFDEV 196
++K K + + + ++TLNN F K E +K F+D F E+
Sbjct: 384 LLKIKGDIALFIQTMESWNYSVSTLNNFQLTLFYKYAELLKRRFSDDFQEI 434
>NCU00274.1 NCU00274.1 hypothetical protein (191786 - 200784)
Length = 2953
Score = 26.9 bits (58), Expect = 2.9
Identities = 18/71 (25%), Positives = 37/71 (51%), Gaps = 4/71 (5%)
Frame = -1
Query: 448 ALNSNTSFLHCSFQDVSDK--QK*LPKLEPNSHSMLEHY--SRMRNRYGSTMVNLVHPLR 281
AL +L CS D+ ++ ++ L K+ + L + SR++++ G + L+ +
Sbjct: 2392 ALRFTALWLECSEDDMVNEVVKRYLSKVPTRKFAPLINQLSSRLQHQEGLFQITLIGLVY 2451
Query: 280 SLVCDKPFHGL 248
S+ D P+HG+
Sbjct: 2452 SICLDHPYHGM 2462
>NCU01901.1 NCU01901.1 hypothetical protein (153797 - 150216)
Length = 1193
Score = 26.6 bits (57), Expect = 3.8
Identities = 19/59 (32%), Positives = 26/59 (43%), Gaps = 1/59 (1%)
Frame = +2
Query: 74 IVHNKTASVLCLTTLNNEDKLEF-NKILEAIKANFNDKFDEVRKKWGGGVMGSKSQANT 247
++H+ A L T NNE K+E +I EA + D KW GG S+ T
Sbjct: 1007 VLHDFQAVALAFKTDNNEAKVEVRQRIWEAFQTGIAD-------KWYGGNQSSQYDPGT 1058
>NCU00551.1 NCU00551.1 hypothetical protein (24876 - 32263)
Length = 2397
Score = 26.2 bits (56), Expect = 5.0
Identities = 18/62 (29%), Positives = 32/62 (51%), Gaps = 3/62 (4%)
Frame = +2
Query: 113 TLNNE-DKLEFNKILEAIK-ANFNDKFDEVRKKWGGGVMGSKSQANTKA-MERLIANEAA 283
TL NE D+ K+ + + ++ DE+R KW V+ S + + KA +E +++ A
Sbjct: 2007 TLANELDRAREEKLRKQSEITRLREELDELRSKWDDEVLNSSTWSKEKARLEATLSDVVA 2066
Query: 284 QR 289
R
Sbjct: 2067 SR 2068
>NCU06549.1 NCU06549.1 hypothetical protein ( (AF309689) Sno-type
pyridoxine vitamin B6 bios
Length = 252
Score = 26.2 bits (56), Expect = 5.0
Identities = 20/59 (33%), Positives = 28/59 (46%), Gaps = 10/59 (16%)
Frame = -1
Query: 331 MRNRYGSTMVNLVHPLR--SLVCDKPFHGLGVRLRL--------GAHDTTTPLLPNLVE 185
+RNRYG+ + + V LR L +PF G+ +R + D T L NLVE
Sbjct: 131 LRNRYGTQLQSFVGDLRLPFLEEGEPFRGVFIRAPVVEEIITTTAGDDEVTKLKGNLVE 189
>NCU06774.1 NCU06774.1 hypothetical protein (14045 - 10776)
Length = 1089
Score = 26.2 bits (56), Expect = 5.0
Identities = 11/35 (31%), Positives = 22/35 (62%)
Frame = +2
Query: 35 PYCIVKGKSRLGSIVHNKTASVLCLTTLNNEDKLE 139
PY I++ ++R+ +I + TAS L N++ +L+
Sbjct: 634 PYIILRDQARVKTIDNTNTASTTTLNNHNHQQQLQ 668
>NCU00526.1 NCU00526.1 hypothetical protein (7709 - 5720)
Length = 549
Score = 26.2 bits (56), Expect = 5.0
Identities = 11/24 (45%), Positives = 16/24 (65%)
Frame = +2
Query: 167 ANFNDKFDEVRKKWGGGVMGSKSQ 238
A+F + DEVR++WGG M K +
Sbjct: 504 ASFLTQPDEVRRRWGGDRMPGKME 527
>NCU07447.1 NCU07447.1 hypothetical protein (78481 - 80469)
Length = 639
Score = 26.2 bits (56), Expect = 5.0
Identities = 19/68 (27%), Positives = 29/68 (41%)
Frame = -1
Query: 442 NSNTSFLHCSFQDVSDKQK*LPKLEPNSHSMLEHYSRMRNRYGSTMVNLVHPLRSLVCDK 263
N TS LH ++VSD + P+ + S ++ R R G P + V K
Sbjct: 459 NEGTSLLHPRRREVSDSYQFAPRAATDLASARRNFGRRRRSTGFPGFIPRKPSATTVPRK 518
Query: 262 PFHGLGVR 239
P G G++
Sbjct: 519 PSGGGGLQ 526
>NCU01268.1 NCU01268.1 hypothetical protein (13467 - 14843)
Length = 313
Score = 25.4 bits (54), Expect = 8.5
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = +1
Query: 199 EEVGWWCHGLQVASEHQGHGKA 264
EE+ W C + A EHQG G+A
Sbjct: 159 EEIIWECE--EAAKEHQGEGQA 178
>NCU02565.1 NCU02565.1 hypothetical protein (203290 - 205060)
Length = 531
Score = 25.4 bits (54), Expect = 8.5
Identities = 11/26 (42%), Positives = 14/26 (53%)
Frame = +2
Query: 119 NNEDKLEFNKILEAIKANFNDKFDEV 196
N D+ EF +L +F DK DEV
Sbjct: 142 NLRDETEFQNVLSQRYVDFEDKLDEV 167
Database: /phillip/Ncr/Ncr_P
Posted date: May 20, 2002 12:05 PM
Number of letters in database: 3,158,374
Number of sequences in database: 6531
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2918972
Number of Sequences: 6531
Number of extensions: 55006
Number of successful extensions: 174
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 166
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 174
length of query: 161
length of database: 3,158,374
effective HSP length: 42
effective length of query: 118
effective length of database: 2,884,072
effective search space: 340320496
effective search space used: 340320496
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)