BLASTX 2.1.3 [Apr-1-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query=
/phillip/projects/Xu/Fgr-S/seq_dir/blast_NcrP/Fgr-S_1_G11_T7.seq
         (253 letters)

Database: /phillip/Ncr/Ncr_P
           6531 sequences; 3,158,374 total letters

Searching..................................................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

NCU00496.1 NCU00496.1 predicted protein (2252 - 291)                   25  3.2
NCU08426.1 NCU08426.1 hypothetical protein (234 - 3718)                25  4.2
NCU01379.1 NCU01379.1 related to the component Tra1 of the SAGA ...    24  9.3
NCU00519.1 NCU00519.1 hypothetical protein (19 - 838)                  24  9.3

>NCU00496.1 NCU00496.1 predicted protein (2252 - 291)
          Length = 612

 Score = 25.4 bits (54), Expect = 3.2
 Identities = 13/38 (34%), Positives = 19/38 (49%)
 Frame = -1

Query: 115 SAETNVTMKSAPKELMSRIHSTGLALFGSGSHTSAATT 2
           S  T+    + P +L  R  STG  +   GS+T+  TT
Sbjct: 527 STSTSAAALAVPPKLGHRRESTGGVVIAHGSYTTNTTT 564



>NCU08426.1 NCU08426.1 hypothetical protein (234 - 3718)
          Length = 933

 Score = 25.0 bits (53), Expect = 4.2
 Identities = 12/23 (52%), Positives = 12/23 (52%), Gaps = 4/23 (17%)
 Frame = -3

Query: 74  TDVTHP----FNWPGSIWLRISH 18
           T  THP      W GSIWL  SH
Sbjct: 821 THATHPEGGDHEWIGSIWLSWSH 843



>NCU01379.1 NCU01379.1 related to the component Tra1 of the SAGA
            complex [MIPS] (37246 - 254
          Length = 3941

 Score = 23.9 bits (50), Expect = 9.3
 Identities = 9/42 (21%), Positives = 21/42 (49%)
 Frame = -1

Query: 139  MSPSL*NHSAETNVTMKSAPKELMSRIHSTGLALFGSGSHTS 14
            +S +L    A   + ++   + ++  ++ +   +FGS SH S
Sbjct: 1139 LSDALLESLASEKLEVREGAERVIQEVYDSAATIFGSSSHVS 1180



>NCU00519.1 NCU00519.1 hypothetical protein (19 - 838)
          Length = 224

 Score = 23.9 bits (50), Expect = 9.3
 Identities = 10/24 (41%), Positives = 14/24 (57%)
 Frame = -1

Query: 115 SAETNVTMKSAPKELMSRIHSTGL 44
           S E     K++PKEL+  IH  G+
Sbjct: 84  SPEAKSDKKTSPKELIKYIHDQGM 107



  Database: /phillip/Ncr/Ncr_P
    Posted date:  May 20, 2002 12:05 PM
  Number of letters in database: 3,158,374
  Number of sequences in database:  6531
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1528657
Number of Sequences: 6531
Number of extensions: 26211
Number of successful extensions: 51
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 51
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 51
length of query: 84
length of database: 3,158,374
effective HSP length: 39
effective length of query: 44
effective length of database: 2,903,665
effective search space: 127761260
effective search space used: 127761260
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)