BLASTX 2.1.3 [Apr-1-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query=
/phillip/projects/Xu/Fgr-S/seq_dir/blast_NcrP/Fgr-S_1_H03_T7.seq
         (588 letters)

Database: /phillip/Ncr/Ncr_P
           6531 sequences; 3,158,374 total letters

Searching..................................................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

NCU01068.1 NCU01068.1 hypothetical protein (198666 - 197149)           29  1.00
NCU02247.1 NCU02247.1 hypothetical protein ( (AF348971) DNA meth...    27  3.8
NCU09739.1 NCU09739.1 hypothetical protein (53187 - 50799)             26  6.5

>NCU01068.1 NCU01068.1 hypothetical protein (198666 - 197149)
          Length = 465

 Score = 28.9 bits (63), Expect = 1.00
 Identities = 12/29 (41%), Positives = 16/29 (54%)
 Frame = -1

Query: 534 QTSHITLYQQQLNCRSSKPPAPTCRSSKP 448
           +T+  T+    L  R + PP P CRS KP
Sbjct: 423 RTTSNTVVNNGLGVRKAPPPPPPCRSKKP 451



>NCU02247.1 NCU02247.1 hypothetical protein ( (AF348971) DNA
           methyltransferase Dim-2 [Neuros
          Length = 1454

 Score = 26.9 bits (58), Expect = 3.8
 Identities = 12/36 (33%), Positives = 18/36 (49%)
 Frame = -1

Query: 537 QQTSHITLYQQQLNCRSSKPPAPTCRSSKPRSTCVS 430
           +Q   ITL +  L C  ++PP P     KP  T ++
Sbjct: 678 EQRRWITLQKDHLTCYHNQPPKPPTAPYKPGDTVLA 713



>NCU09739.1 NCU09739.1 hypothetical protein (53187 - 50799)
          Length = 675

 Score = 26.2 bits (56), Expect = 6.5
 Identities = 17/40 (42%), Positives = 22/40 (54%), Gaps = 4/40 (10%)
 Frame = -2

Query: 113 GCRSDIIQTCC*HHSKKYLNKLNG----VNALTNSDLGRD 6
           G R   I  C  HH  + LN+LNG    VN+ ++S L RD
Sbjct: 180 GNREAAISHC--HHGVQILNQLNGGKSKVNSSSSSILSRD 217



  Database: /phillip/Ncr/Ncr_P
    Posted date:  May 20, 2002 12:05 PM
  Number of letters in database: 3,158,374
  Number of sequences in database:  6531
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3347814
Number of Sequences: 6531
Number of extensions: 67525
Number of successful extensions: 173
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 165
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 173
length of query: 196
length of database: 3,158,374
effective HSP length: 42
effective length of query: 153
effective length of database: 2,884,072
effective search space: 441263016
effective search space used: 441263016
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)