BLASTX 2.1.3 [Apr-1-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query=
/phillip/projects/Xu/Fgr-S/seq_dir/blast_NcrP/Fgr-S_1_H05_T7.seq
(480 letters)
Database: /phillip/Ncr/Ncr_P
6531 sequences; 3,158,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
NCU08122.1 NCU08122.1 predicted protein (32552 - 32156) 29 0.58
NCU02528.1 NCU02528.1 hypothetical protein (92845 - 91599) 28 0.99
NCU07451.1 NCU07451.1 hypothetical protein (93328 - 95666) 28 0.99
NCU02159.1 NCU02159.1 hypothetical protein (43247 - 44467) 28 1.3
NCU06705.1 NCU06705.1 hypothetical protein (5034 - 2301) 28 1.7
NCU08951.1 NCU08951.1 hypothetical protein (8978 - 8143) 27 3.8
NCU09227.1 NCU09227.1 hypothetical protein (141439 - 139123) 27 3.8
NCU02640.1 NCU02640.1 predicted protein (15949 - 16450) 26 4.9
>NCU08122.1 NCU08122.1 predicted protein (32552 - 32156)
Length = 94
Score = 29.3 bits (64), Expect = 0.58
Identities = 13/33 (39%), Positives = 23/33 (69%)
Frame = +2
Query: 104 KEGKQESKKKIFEVLKTKSNKLPKEKQKERKEK 202
K+G+++ KKK + K K K K+K+K++K+K
Sbjct: 17 KQGEKKKKKKKKKKKKKKKKKKKKKKKKKKKKK 49
>NCU02528.1 NCU02528.1 hypothetical protein (92845 - 91599)
Length = 369
Score = 28.5 bits (62), Expect = 0.99
Identities = 16/36 (44%), Positives = 22/36 (60%), Gaps = 2/36 (5%)
Frame = +2
Query: 101 LKEGKQ--ESKKKIFEVLKTKSNKLPKEKQKERKEK 202
LK+ KQ ES E T++ K K+K+KE+KEK
Sbjct: 244 LKDAKQSEESSSDDLESSATETKKSKKDKKKEKKEK 279
>NCU07451.1 NCU07451.1 hypothetical protein (93328 - 95666)
Length = 663
Score = 28.5 bits (62), Expect = 0.99
Identities = 12/30 (40%), Positives = 20/30 (66%)
Frame = +2
Query: 110 GKQESKKKIFEVLKTKSNKLPKEKQKERKE 199
G++ K+K E K + KL +EK+KE+K+
Sbjct: 606 GEELRKQKAIEAEKAAAKKLQREKEKEKKK 635
>NCU02159.1 NCU02159.1 hypothetical protein (43247 - 44467)
Length = 369
Score = 28.1 bits (61), Expect = 1.3
Identities = 12/30 (40%), Positives = 22/30 (73%)
Frame = +2
Query: 113 KQESKKKIFEVLKTKSNKLPKEKQKERKEK 202
K++ K K + KT++ + PKE++KE+K+K
Sbjct: 49 KKDKKDKKEKKSKTETTEEPKEEKKEKKDK 78
>NCU06705.1 NCU06705.1 hypothetical protein (5034 - 2301)
Length = 679
Score = 27.7 bits (60), Expect = 1.7
Identities = 20/58 (34%), Positives = 30/58 (51%)
Frame = +2
Query: 104 KEGKQESKKKIFEVLKTKSNKLPKEKQKERKEKINLFGFLSKANNTQTIGGKKIQQTL 277
KE K ESKK+ +K +K K+++KE+KE+ K + T+T K TL
Sbjct: 546 KEEKAESKKE------SKKSKKEKKEKKEKKER-------KKGDETKTTEAKGSTATL 590
Score = 25.4 bits (54), Expect = 8.4
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = +2
Query: 104 KEGKQESKKKIFEVLKTKSNKLPKEKQKERKEK 202
K K+E + + + K +S K K+ +KE+KEK
Sbjct: 534 KTDKEEEEPVVEKEEKAESKKESKKSKKEKKEK 566
>NCU08951.1 NCU08951.1 hypothetical protein (8978 - 8143)
Length = 242
Score = 26.6 bits (57), Expect = 3.8
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = +2
Query: 107 EGKQESKKKIFEVLKTKSNKLPKEKQKERKEKI 205
E K + +KK+ E K K K+++KE+ EK+
Sbjct: 15 EKKDKKEKKMSEEAGVKKEKKDKKEKKEKTEKL 47
>NCU09227.1 NCU09227.1 hypothetical protein (141439 - 139123)
Length = 713
Score = 26.6 bits (57), Expect = 3.8
Identities = 14/34 (41%), Positives = 18/34 (52%)
Frame = +2
Query: 104 KEGKQESKKKIFEVLKTKSNKLPKEKQKERKEKI 205
K+GK ESKK K K K ++K K + KI
Sbjct: 5 KKGKSESKKAKLAEKKQKQEKKAEKKAKVKSAKI 38
>NCU02640.1 NCU02640.1 predicted protein (15949 - 16450)
Length = 123
Score = 26.2 bits (56), Expect = 4.9
Identities = 10/31 (32%), Positives = 19/31 (61%)
Frame = +2
Query: 113 KQESKKKIFEVLKTKSNKLPKEKQKERKEKI 205
K+ ++++ +K K +L EK+ ERK +I
Sbjct: 50 KRAKERQLLAAVKAKEKELKDEKEAERKRRI 80
Database: /phillip/Ncr/Ncr_P
Posted date: May 20, 2002 12:05 PM
Number of letters in database: 3,158,374
Number of sequences in database: 6531
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1855630
Number of Sequences: 6531
Number of extensions: 22926
Number of successful extensions: 121
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 85
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 116
length of query: 160
length of database: 3,158,374
effective HSP length: 42
effective length of query: 117
effective length of database: 2,884,072
effective search space: 337436424
effective search space used: 337436424
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)