BLASTX 2.1.3 [Apr-1-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query=
/phillip/projects/Xu/Fgr-S/seq_dir/blast_NcrP/Fgr-S_1_H08_T7.seq
(255 letters)
Database: /phillip/Ncr/Ncr_P
6531 sequences; 3,158,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
NCU02223.1 NCU02223.1 hypothetical protein (19136 - 21773) 27 1.5
NCU07505.1 NCU07505.1 predicted protein (103313 - 105650) 27 1.5
NCU08604.1 NCU08604.1 hypothetical protein (38799 - 34195) 25 4.3
NCU07440.1 NCU07440.1 hypothetical protein ( (AB009461) MUS38 [N... 25 4.3
NCU01953.1 NCU01953.1 hypothetical protein (51771 - 57836) 24 9.5
>NCU02223.1 NCU02223.1 hypothetical protein (19136 - 21773)
Length = 836
Score = 26.6 bits (57), Expect = 1.5
Identities = 12/45 (26%), Positives = 21/45 (46%)
Frame = -1
Query: 135 RMVPKLKEQKKKNEQRYLSLAEMLESVSSLLYDAQSSLQPRPRPR 1
+M+ QKK+ +QRYL + L +QP+ +P+
Sbjct: 84 KMLQDKLNQKKQEQQRYLQQMQQLRQKQQQQQQQNQQVQPQGQPQ 128
>NCU07505.1 NCU07505.1 predicted protein (103313 - 105650)
Length = 578
Score = 26.6 bits (57), Expect = 1.5
Identities = 13/48 (27%), Positives = 24/48 (49%)
Frame = -1
Query: 147 PQELRMVPKLKEQKKKNEQRYLSLAEMLESVSSLLYDAQSSLQPRPRP 4
P ++ +V L +KKKN++R ++ ES+ D + +P P
Sbjct: 34 PFQVHIVDPLVAEKKKNKKRRRTVGGKAESIDDEDTDPADKIHSQPSP 81
>NCU08604.1 NCU08604.1 hypothetical protein (38799 - 34195)
Length = 1487
Score = 25.0 bits (53), Expect = 4.3
Identities = 11/42 (26%), Positives = 24/42 (56%)
Frame = -1
Query: 141 ELRMVPKLKEQKKKNEQRYLSLAEMLESVSSLLYDAQSSLQP 16
+L PK+KE+ +N++ +++E+ E+ S ++ L P
Sbjct: 811 KLATSPKVKEEDTENKENLANISEVPETTRSKAESDEAPLPP 852
>NCU07440.1 NCU07440.1 hypothetical protein ( (AB009461) MUS38
[Neurospora crassa] ) (50145
Length = 876
Score = 25.0 bits (53), Expect = 4.3
Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Frame = -1
Query: 213 FTVSF-PLKSTKINLILLA*AVWPQELRMVPKLKEQKKKNE 94
FTV F PL + N+ L ++WP+ V + E KKK E
Sbjct: 95 FTVGFSPLATMMRNMFLRKASLWPRFHVQVAQSLEGKKKAE 135
>NCU01953.1 NCU01953.1 hypothetical protein (51771 - 57836)
Length = 1983
Score = 23.9 bits (50), Expect = 9.5
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = +3
Query: 108 FVPSILEPFLIPEAKRPKPIVLN 176
F+ +EP L PE P+PI L+
Sbjct: 965 FISEHIEPVLEPEPPAPEPIPLS 987
Database: /phillip/Ncr/Ncr_P
Posted date: May 20, 2002 12:05 PM
Number of letters in database: 3,158,374
Number of sequences in database: 6531
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1333397
Number of Sequences: 6531
Number of extensions: 20267
Number of successful extensions: 66
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 62
length of query: 85
length of database: 3,158,374
effective HSP length: 39
effective length of query: 45
effective length of database: 2,903,665
effective search space: 130664925
effective search space used: 130664925
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)