BLASTX 2.1.3 [Apr-1-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query=
/phillip/projects/Xu/Fgr-S/seq_dir/blast_NcrP/Fgr-S_1_H11_T7.seq
(680 letters)
Database: /phillip/Ncr/Ncr_P
6531 sequences; 3,158,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
NCU07539.1 NCU07539.1 hypothetical protein (67447 - 68678) 93 3e-27
NCU02560.1 NCU02560.1 hypothetical protein (190730 - 192318) 35 0.013
NCU08075.1 NCU08075.1 predicted protein (93399 - 90776) 28 1.5
NCU08370.1 NCU08370.1 hypothetical protein (126899 - 128913) 28 2.6
NCU01642.1 NCU01642.1 hypothetical protein (12584 - 3605) 27 4.5
NCU08626.1 NCU08626.1 DEOXYRIBODIPYRIMIDINE PHOTOLYASE (DNA PHOT... 27 5.8
NCU00784.1 NCU00784.1 hypothetical protein (64831 - 67390) 27 5.8
NCU08888.1 NCU08888.1 hypothetical protein (23107 - 20678) 27 5.8
NCU06440.1 NCU06440.1 hypothetical protein (98339 - 97213) 26 10.0
NCU06714.1 NCU06714.1 hypothetical protein (26752 - 23897) 26 10.0
>NCU07539.1 NCU07539.1 hypothetical protein (67447 - 68678)
Length = 382
Score = 93.2 bits (230), Expect(2) = 3e-27
Identities = 60/135 (44%), Positives = 78/135 (57%), Gaps = 19/135 (14%)
Frame = +1
Query: 76 FQDLNIWLSN-GKKMEVKVPVG-CLLIQSGKQLEWLTGGECLAGMHEVVVTKRTLEAIEL 249
+ L+IW N GK++ VK+P G LL+Q+GKQLE +TGG AG HEVVV +RT+E IE
Sbjct: 246 YPGLHIWARNTGKRIAVKIPPGNYLLVQAGKQLEHITGGLIKAGFHEVVVNERTVEVIEK 305
Query: 250 AKEQ--NRSLWRISSTLFSHIASDATLKPLGHFAEAP---------------NAHSYPPI 378
K+Q +R L RISST F H+ SD L P+ AE +YPP+
Sbjct: 306 RKQQFPDRPLIRISSTFFWHLNSDHDLAPIPKLAEEAYRLRAEQFNLGRDEGEEKTYPPM 365
Query: 379 CAGEYVEQELSAINL 423
GE V++EL I L
Sbjct: 366 KVGELVQEELKHIAL 380
Score = 44.7 bits (104), Expect(2) = 3e-27
Identities = 18/22 (81%), Positives = 20/22 (90%)
Frame = +3
Query: 18 VFAGFHYDLNFLTIHGRSRFPG 83
+ AGFH DLNFLTIHGRSR+PG
Sbjct: 227 ILAGFHTDLNFLTIHGRSRYPG 248
>NCU02560.1 NCU02560.1 hypothetical protein (190730 - 192318)
Length = 402
Score = 35.4 bits (80), Expect = 0.013
Identities = 17/50 (34%), Positives = 30/50 (60%)
Frame = +1
Query: 106 GKKMEVKVPVGCLLIQSGKQLEWLTGGECLAGMHEVVVTKRTLEAIELAK 255
G+ ++VK+P C+ Q+G+ LE +TGG+ A H V + + A +A+
Sbjct: 316 GQTVQVKIPRDCIAFQTGEALERITGGKFKAVPHFVRGARAEMSAGRIAR 365
>NCU08075.1 NCU08075.1 predicted protein (93399 - 90776)
Length = 781
Score = 28.5 bits (62), Expect = 1.5
Identities = 27/93 (29%), Positives = 43/93 (46%), Gaps = 3/93 (3%)
Frame = -1
Query: 446 T*SATFPFRLIAESSCSTYSPAHIXXXXXXXXASAKWPNGLSVASEAMCENSVDE---IL 276
T SA P +ESS ST S I A+++W N S +S ++ E++V +
Sbjct: 128 TTSAIKPTHYRSESSSSTSSTTTIASTDSVQSATSEWSN--STSSTSISESTVSDCKVTS 185
Query: 275 HKLRFCSLASSIASNVLLVTTTSCIPAKHSPPV 177
+ C + +S+A + L I H+PPV
Sbjct: 186 TSPKDCEMIASVAVDGGLQCFAMTI--SHTPPV 216
>NCU08370.1 NCU08370.1 hypothetical protein (126899 - 128913)
Length = 630
Score = 27.7 bits (60), Expect = 2.6
Identities = 15/34 (44%), Positives = 20/34 (58%)
Frame = -2
Query: 169 PTVSLTE*EDSQQGPSPPSFYHYLTKCSGPGNLL 68
P+V +T D++Q PSPPS + GPG LL
Sbjct: 8 PSVLVT---DARQRPSPPSAPRRMGPTGGPGRLL 38
>NCU01642.1 NCU01642.1 hypothetical protein (12584 - 3605)
Length = 2667
Score = 26.9 bits (58), Expect = 4.5
Identities = 13/43 (30%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Frame = +1
Query: 301 HIASDATLKPLGHFAEAPNAHSYPPIC--AGEYVEQELSAINL 423
HI A ++ HFA N+ Y P+ A +V+ +L A+++
Sbjct: 576 HIFKIAVIQACSHFARLENSSKYQPLFTKASAFVQGQLQAMSM 618
>NCU08626.1 NCU08626.1 DEOXYRIBODIPYRIMIDINE PHOTOLYASE (DNA
PHOTOLYASE) (PHOTOREACTIVATING
Length = 642
Score = 26.6 bits (57), Expect = 5.8
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = +1
Query: 88 NIWLSNGKKMEVKVPVGCLLIQSGKQLE 171
++WL++ K E VP+ CL + S + LE
Sbjct: 152 SLWLASQKAKEAGVPLICLYVLSPEDLE 179
>NCU00784.1 NCU00784.1 hypothetical protein (64831 - 67390)
Length = 683
Score = 26.6 bits (57), Expect = 5.8
Identities = 13/32 (40%), Positives = 19/32 (58%)
Frame = -2
Query: 220 SPLPHAFQLNIHHL*AIPTVSLTE*EDSQQGP 125
SPL H Q +IHH+ P +++T D+ Q P
Sbjct: 228 SPLQHLDQYSIHHISQRPVLAITN-TDTDQPP 258
>NCU08888.1 NCU08888.1 hypothetical protein (23107 - 20678)
Length = 685
Score = 26.6 bits (57), Expect = 5.8
Identities = 16/41 (39%), Positives = 19/41 (46%)
Frame = -1
Query: 131 GTFTSIFLPLLNQMFRSWKSTTAMDGQEIKIIMEPSKHLGR 9
G FT L + F T M+GQE+ E KHLGR
Sbjct: 237 GPFTYEALAPKDINFVPLNQTKKMNGQELMEFYESDKHLGR 277
>NCU06440.1 NCU06440.1 hypothetical protein (98339 - 97213)
Length = 269
Score = 25.8 bits (55), Expect = 10.0
Identities = 13/48 (27%), Positives = 26/48 (54%)
Frame = +1
Query: 349 APNAHSYPPICAGEYVEQELSAINLKGKVALYVHTDRRLIW*LGDSLV 492
+P+ H + AGE V++ A+ +KGK + + ++R L D+ +
Sbjct: 13 SPDGHVFQVEYAGEAVKRGTCAVGVKGKDVVVLGCEKRSAMKLQDTRI 60
>NCU06714.1 NCU06714.1 hypothetical protein (26752 - 23897)
Length = 951
Score = 25.8 bits (55), Expect = 10.0
Identities = 12/41 (29%), Positives = 19/41 (46%)
Frame = -1
Query: 332 NGLSVASEAMCENSVDEILHKLRFCSLASSIASNVLLVTTT 210
NG V+ C N + HK+ F S ++N+ + TT
Sbjct: 31 NGNHVSPAKTCSNEKKQKKHKILFLDAYDSFSNNITSLLTT 71
Database: /phillip/Ncr/Ncr_P
Posted date: May 20, 2002 12:05 PM
Number of letters in database: 3,158,374
Number of sequences in database: 6531
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4545220
Number of Sequences: 6531
Number of extensions: 102611
Number of successful extensions: 225
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 215
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 225
length of query: 226
length of database: 3,158,374
effective HSP length: 44
effective length of query: 182
effective length of database: 2,871,010
effective search space: 522523820
effective search space used: 522523820
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)