BLASTX 2.1.3 [Apr-1-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query=
/phillip/projects/Xu/Fgr-S/seq_dir/blast_NcrP/Fgr-S_2_A01_T7.seq
(521 letters)
Database: /phillip/Ncr/Ncr_P
6531 sequences; 3,158,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
NCU08960.1 NCU08960.1 predicted protein (33501 - 34268) 68 1e-12
NCU01407.1 NCU01407.1 predicted protein (9346 - 11184) 29 0.65
NCU06897.1 NCU06897.1 predicted protein (79449 - 78379) 29 0.85
NCU06463.1 NCU06463.1 predicted protein (170051 - 171658) 25 9.4
NCU07020.1 NCU07020.1 hypothetical protein (3093 - 971) 25 9.4
>NCU08960.1 NCU08960.1 predicted protein (33501 - 34268)
Length = 109
Score = 68.2 bits (165), Expect = 1e-12
Identities = 41/101 (40%), Positives = 52/101 (50%), Gaps = 1/101 (0%)
Frame = +2
Query: 74 AALILHDDGIPITSEKIATVVKAAGIK-VEAYWPALFAKLLEKRSVDDLILSVGSXXXXX 250
AALIL DDG+ IT++KI T++KAA I+ VE W +LFAK LE + V DL+ +VGS
Sbjct: 11 AALILADDGVEITADKIQTIIKAAKIEDVEPIWASLFAKALEGKDVKDLLSNVGS--GGA 68
Query: 251 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSDDDMGFSLFD 373
SD+DMGF LFD
Sbjct: 69 AAAPAAAGAAAAGGAAEEAKAEEKVEEKEESDEDMGFGLFD 109
>NCU01407.1 NCU01407.1 predicted protein (9346 - 11184)
Length = 539
Score = 29.3 bits (64), Expect = 0.65
Identities = 15/63 (23%), Positives = 26/63 (40%)
Frame = -2
Query: 190 ELGEERGPVGLNLDSGSLHHRRDLLGSDGDPVIVEDEGGKGAGDLAGRHGDGFSPERTSA 11
E +GP+ L G+ H RR L + G P+ +G+ +G G + +A
Sbjct: 306 ESSTSKGPIDLTALRGAPHRRRSLTTASGSPISRRGSADQGSASGSGGEAMGVGGQAHAA 365
Query: 10 ATT 2
+
Sbjct: 366 TNS 368
>NCU06897.1 NCU06897.1 predicted protein (79449 - 78379)
Length = 356
Score = 28.9 bits (63), Expect = 0.85
Identities = 17/49 (34%), Positives = 23/49 (46%)
Frame = -2
Query: 217 EVIDAPLLQELGEERGPVGLNLDSGSLHHRRDLLGSDGDPVIVEDEGGK 71
E +D +E GEE G G +D+ S ++ D D EDE GK
Sbjct: 274 EEMDTEETEEAGEEMGEAGEEMDTESRDADDEMDEDDEDMGEAEDEAGK 322
>NCU06463.1 NCU06463.1 predicted protein (170051 - 171658)
Length = 467
Score = 25.4 bits (54), Expect = 9.4
Identities = 21/55 (38%), Positives = 25/55 (45%)
Frame = -2
Query: 199 LLQELGEERGPVGLNLDSGSLHHRRDLLGSDGDPVIVEDEGGKGAGDLAGRHGDG 35
L Q G E G G D G L + + D V+VE+ GG G GD GDG
Sbjct: 306 LEQVRGLELGVNGELRDGGELGGKEQSITGDL-MVVVEENGGDGDGD-----GDG 354
>NCU07020.1 NCU07020.1 hypothetical protein (3093 - 971)
Length = 662
Score = 25.4 bits (54), Expect = 9.4
Identities = 14/29 (48%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
Frame = -2
Query: 91 VEDEGGKGAGDLA-GRHGDGFSPERTSAA 8
++DEGG GAGD RH +PE S A
Sbjct: 52 LDDEGGFGAGDNGFRRHDSTDAPEAQSGA 80
Database: /phillip/Ncr/Ncr_P
Posted date: May 20, 2002 12:05 PM
Number of letters in database: 3,158,374
Number of sequences in database: 6531
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1992674
Number of Sequences: 6531
Number of extensions: 32802
Number of successful extensions: 144
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 142
length of query: 173
length of database: 3,158,374
effective HSP length: 42
effective length of query: 131
effective length of database: 2,884,072
effective search space: 377813432
effective search space used: 377813432
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)