BLASTX 2.1.3 [Apr-1-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query=
/phillip/projects/Xu/Fgr-S/seq_dir/blast_NcrP/Fgr-S_2_A02_T7.seq
         (209 letters)

Database: /phillip/Ncr/Ncr_P
           6531 sequences; 3,158,374 total letters

Searching..................................................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

NCU07920.1 NCU07920.1 hypothetical protein (61032 - 63904)             25  3.7
NCU06536.1 NCU06536.1 hypothetical protein (416 - 4100)                25  3.7
NCU08311.1 NCU08311.1 predicted protein (81266 - 80871)                24  6.3

>NCU07920.1 NCU07920.1 hypothetical protein (61032 - 63904)
          Length = 731

 Score = 24.6 bits (52), Expect = 3.7
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +1

Query: 34  IRNGKQDRTPSTLNCDTRRRNLDHP 108
           I  GK+  TP  LNC+  R + ++P
Sbjct: 613 IGEGKRWFTPDKLNCENERLDCENP 637



>NCU06536.1 NCU06536.1 hypothetical protein (416 - 4100)
          Length = 1104

 Score = 24.6 bits (52), Expect = 3.7
 Identities = 13/38 (34%), Positives = 19/38 (49%)
 Frame = -2

Query: 196 RAGSTWSPSLGL*TGASPSNHHGRNQQEAKDDRGCGAW 83
           RAG  W+ +  L +GA+   HH   QQ+ +  R    W
Sbjct: 67  RAG--WAKASSLASGAAVVRHHHHQQQQTRGFRFGRTW 102



>NCU08311.1 NCU08311.1 predicted protein (81266 - 80871)
          Length = 131

 Score = 23.9 bits (50), Expect = 6.3
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = +1

Query: 82  TRRRNLDHPWLLAGSCHDGCWEMLLFI 162
           TR R+L    L   +CH GC   + F+
Sbjct: 97  TRNRDLGETSLGVDTCHQGCCFTVTFV 123



  Database: /phillip/Ncr/Ncr_P
    Posted date:  May 20, 2002 12:05 PM
  Number of letters in database: 3,158,374
  Number of sequences in database:  6531
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1537822
Number of Sequences: 6531
Number of extensions: 30753
Number of successful extensions: 85
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 85
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 85
length of query: 69
length of database: 3,158,374
effective HSP length: 39
effective length of query: 30
effective length of database: 2,903,665
effective search space: 87109950
effective search space used: 87109950
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 48 (23.1 bits)