BLASTX 2.1.3 [Apr-1-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query=
/phillip/projects/Xu/Fgr-S/seq_dir/blast_NcrP/Fgr-S_2_A04_T7.seq
(352 letters)
Database: /phillip/Ncr/Ncr_P
6531 sequences; 3,158,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
NCU08417.1 NCU08417.1 predicted protein (56918 - 52131) 28 1.1
NCU00624.1 NCU00624.1 hypothetical protein (153200 - 152107) 27 2.4
NCU01032.1 NCU01032.1 hypothetical protein (97720 - 99132) 27 2.4
NCU02354.1 NCU02354.1 hypothetical protein (15166 - 19998) 26 3.1
NCU06556.1 NCU06556.1 hypothetical protein ( (AF309689) putative... 25 5.3
NCU08543.1 NCU08543.1 predicted protein (54993 - 57294) 25 7.0
NCU00373.1 NCU00373.1 predicted protein (32794 - 31763) 25 9.1
>NCU08417.1 NCU08417.1 predicted protein (56918 - 52131)
Length = 1578
Score = 27.7 bits (60), Expect = 1.1
Identities = 17/58 (29%), Positives = 23/58 (39%)
Frame = +3
Query: 168 HSSLLRQMQNP*GPLSWYGYHPSCHRQQSPPSHHP**TGRSALPQRCMLQRPPSPRQR 341
H L+Q Q HP H+ Q PPSH P + Q+PP P+ +
Sbjct: 74 HPRHLQQQQQQQQQQQQQQQHPQQHQSQLPPSHRS--------PPQPAHQQPPPPQSQ 123
>NCU00624.1 NCU00624.1 hypothetical protein (153200 - 152107)
Length = 322
Score = 26.6 bits (57), Expect = 2.4
Identities = 14/28 (50%), Positives = 16/28 (57%)
Frame = +3
Query: 249 QSPPSHHP**TGRSALPQRCMLQRPPSP 332
QSPP HHP S +PQ L+ PP P
Sbjct: 8 QSPPLHHPVPQHVSTVPQ---LRSPPPP 32
>NCU01032.1 NCU01032.1 hypothetical protein (97720 - 99132)
Length = 470
Score = 26.6 bits (57), Expect = 2.4
Identities = 12/36 (33%), Positives = 19/36 (52%)
Frame = +3
Query: 162 GHHSSLLRQMQNP*GPLSWYGYHPSCHRQQSPPSHH 269
GHH + Q+++ ++ H R+Q PPSHH
Sbjct: 45 GHHVRMQEQLRSQ--QRNYVRRHHVARRRQRPPSHH 78
>NCU02354.1 NCU02354.1 hypothetical protein (15166 - 19998)
Length = 1254
Score = 26.2 bits (56), Expect = 3.1
Identities = 15/37 (40%), Positives = 18/37 (48%)
Frame = +3
Query: 231 PSCHRQQSPPSHHP**TGRSALPQRCMLQRPPSPRQR 341
PS QQ PP H P +PQ L PP P+Q+
Sbjct: 870 PSYSHQQPPPYHGP-GPQHVPIPQPPHLSPPPPPQQQ 905
>NCU06556.1 NCU06556.1 hypothetical protein ( (AF309689) putative
thioredoxin G6G8.7 [Neuros
Length = 107
Score = 25.4 bits (54), Expect = 5.3
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = -2
Query: 294 MPTFLFIKDGAKVDSVVG 241
MPTF+ K+G K D VG
Sbjct: 76 MPTFVIFKNGDKADEFVG 93
>NCU08543.1 NCU08543.1 predicted protein (54993 - 57294)
Length = 706
Score = 25.0 bits (53), Expect = 7.0
Identities = 20/65 (30%), Positives = 32/65 (48%), Gaps = 8/65 (12%)
Frame = -3
Query: 305 TLRQCRPSCLSRMVRRWTLLSVAGRMISIPR*WPSWVLHL---PKKGR-----VMPLLCQ 150
T+R+ +PS + R RR + + S R PS+ + L P+ G+ + PL+ Q
Sbjct: 218 TIRRYKPSSIPRPKRRGSGAQITQPSCSDRRQTPSFTIELVLAPQAGQSPQRPLSPLIPQ 277
Query: 149 *EPAP 135
PAP
Sbjct: 278 AMPAP 282
>NCU00373.1 NCU00373.1 predicted protein (32794 - 31763)
Length = 343
Score = 24.6 bits (52), Expect = 9.1
Identities = 12/25 (48%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
Frame = +1
Query: 4 WSRPRYCNS-EQPVEMWEVLNSKPN 75
WS+P +S PVE W VL S P+
Sbjct: 234 WSQPTTPSSLPAPVESWRVLPSSPS 258
Database: /phillip/Ncr/Ncr_P
Posted date: May 20, 2002 12:05 PM
Number of letters in database: 3,158,374
Number of sequences in database: 6531
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2323987
Number of Sequences: 6531
Number of extensions: 50309
Number of successful extensions: 118
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 118
length of query: 117
length of database: 3,158,374
effective HSP length: 42
effective length of query: 74
effective length of database: 2,884,072
effective search space: 213421328
effective search space used: 213421328
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)