BLASTX 2.1.3 [Apr-1-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query=
/phillip/projects/Xu/Fgr-S/seq_dir/blast_NcrP/Fgr-S_2_A08_T7.seq
         (309 letters)

Database: /phillip/Ncr/Ncr_P
           6531 sequences; 3,158,374 total letters

Searching..................................................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

NCU08987.1 NCU08987.1 predicted protein (44956 - 45462)                25  5.6
NCU00789.1 NCU00789.1 hypothetical protein (81230 - 84173)             25  7.4
NCU09657.1 NCU09657.1 hypothetical protein (44499 - 49473)             25  7.4

>NCU08987.1 NCU08987.1 predicted protein (44956 - 45462)
          Length = 168

 Score = 25.0 bits (53), Expect = 5.6
 Identities = 10/32 (31%), Positives = 17/32 (52%)
 Frame = +1

Query: 124 QNPGWVSYKF*THTGILCFSFSVCMCTIAQFH 219
           ++PGW +       G+L  +F  C+C+   FH
Sbjct: 11  EDPGWWTL---VDVGLLGHTFHFCVCSAGGFH 39



>NCU00789.1 NCU00789.1 hypothetical protein (81230 - 84173)
          Length = 930

 Score = 24.6 bits (52), Expect = 7.4
 Identities = 9/22 (40%), Positives = 15/22 (67%)
 Frame = +2

Query: 140 FLTSFKLIPASYVSHFLSACAL 205
           FLT   L+P ++++ FLS C +
Sbjct: 450 FLTVVWLVPVAFLASFLSICTI 471



>NCU09657.1 NCU09657.1 hypothetical protein (44499 - 49473)
          Length = 1499

 Score = 24.6 bits (52), Expect = 7.4
 Identities = 10/28 (35%), Positives = 15/28 (52%)
 Frame = +1

Query: 13 PRFSGKSSCGETTKGSDRRGAESSFVKG 96
          P     ++ G+TT+G  R GA    V+G
Sbjct: 6  PSSFASAAAGQTTRGDARSGARGDSVRG 33



  Database: /phillip/Ncr/Ncr_P
    Posted date:  May 20, 2002 12:05 PM
  Number of letters in database: 3,158,374
  Number of sequences in database:  6531
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1946881
Number of Sequences: 6531
Number of extensions: 36244
Number of successful extensions: 82
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 81
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 82
length of query: 103
length of database: 3,158,374
effective HSP length: 42
effective length of query: 60
effective length of database: 2,884,072
effective search space: 173044320
effective search space used: 173044320
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)