BLASTX 2.1.3 [Apr-1-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query=
/phillip/projects/Xu/Fgr-S/seq_dir/blast_NcrP/Fgr-S_2_A11_T7.seq
         (440 letters)

Database: /phillip/Ncr/Ncr_P
           6531 sequences; 3,158,374 total letters

Searching..................................................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

NCU02758.1 NCU02758.1 hypothetical protein (27697 - 29462)             26  4.4
NCU09292.1 NCU09292.1 predicted protein (21274 - 26204)                26  4.4

>NCU02758.1 NCU02758.1 hypothetical protein (27697 - 29462)
          Length = 515

 Score = 26.2 bits (56), Expect = 4.4
 Identities = 9/26 (34%), Positives = 16/26 (60%)
 Frame = -1

Query: 440 SSGRPGRSAGPDLGAGSVPCRLRCGP 363
           S+  P ++ GP  GAG++P + +  P
Sbjct: 125 SNKEPNKTVGPSAGAGTIPAKRKPPP 150



>NCU09292.1 NCU09292.1 predicted protein (21274 - 26204)
          Length = 1362

 Score = 26.2 bits (56), Expect = 4.4
 Identities = 12/24 (50%), Positives = 13/24 (54%)
 Frame = +1

Query: 364 GPHRRRHGTEPAPRSGPADLPGRP 435
           G HRR+H  E      P DLP RP
Sbjct: 240 GSHRRQHDQESIAPLLPQDLPYRP 263



  Database: /phillip/Ncr/Ncr_P
    Posted date:  May 20, 2002 12:05 PM
  Number of letters in database: 3,158,374
  Number of sequences in database:  6531
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2383717
Number of Sequences: 6531
Number of extensions: 38773
Number of successful extensions: 124
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 124
length of query: 146
length of database: 3,158,374
effective HSP length: 42
effective length of query: 104
effective length of database: 2,884,072
effective search space: 299943488
effective search space used: 299943488
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)