BLASTX 2.1.3 [Apr-1-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query=
/phillip/projects/Xu/Fgr-S/seq_dir/blast_NcrP/Fgr-S_2_A12_T7.seq
         (295 letters)

Database: /phillip/Ncr/Ncr_P
           6531 sequences; 3,158,374 total letters

Searching..................................................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

NCU00032.1 NCU00032.1 hypothetical protein (122970 - 120367)           26  3.2
NCU02525.1 NCU02525.1 hypothetical protein (76217 - 79732)             25  7.2

>NCU00032.1 NCU00032.1 hypothetical protein (122970 - 120367)
          Length = 823

 Score = 25.8 bits (55), Expect = 3.2
 Identities = 13/46 (28%), Positives = 23/46 (49%)
 Frame = +3

Query: 9   AAEVLNDVKTLQNITNDLKTFTKYHMH*FSLAPLHQESIYKQQSYM 146
           A E   D   +    NDL TFT+  +H +  + L +  I +++ Y+
Sbjct: 405 AIEHARDTNVVLQAQNDLLTFTQKLLHEWEASKLSEIEISEEEVYL 450



>NCU02525.1 NCU02525.1 hypothetical protein (76217 - 79732)
          Length = 1171

 Score = 24.6 bits (52), Expect = 7.2
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = +1

Query: 211 SPKQRRRHQPVPVSSWQIRPPTCPGGRS 294
           +P Q   H P+P SS+  + PT   G S
Sbjct: 136 APSQATAHNPLPFSSFPPQSPTSSVGYS 163



  Database: /phillip/Ncr/Ncr_P
    Posted date:  May 20, 2002 12:05 PM
  Number of letters in database: 3,158,374
  Number of sequences in database:  6531
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1713273
Number of Sequences: 6531
Number of extensions: 29881
Number of successful extensions: 74
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 74
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 74
length of query: 98
length of database: 3,158,374
effective HSP length: 39
effective length of query: 58
effective length of database: 2,903,665
effective search space: 168412570
effective search space used: 168412570
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)