BLASTX 2.1.3 [Apr-1-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query=
/phillip/projects/Xu/Fgr-S/seq_dir/blast_NcrP/Fgr-S_2_B02_T7.seq
(365 letters)
Database: /phillip/Ncr/Ncr_P
6531 sequences; 3,158,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
NCU00598.1 NCU00598.1 hypothetical protein (66148 - 66891) 43 3e-05
NCU06556.1 NCU06556.1 hypothetical protein ( (AF309689) putative... 39 5e-04
NCU02520.1 NCU02520.1 hypothetical protein (53392 - 54482) 37 0.002
NCU09803.1 NCU09803.1 hypothetical protein (10187 - 11043) 33 0.027
NCU06731.1 NCU06731.1 predicted protein (15912 - 13475) 26 3.3
NCU01032.1 NCU01032.1 hypothetical protein (97720 - 99132) 26 4.4
NCU08417.1 NCU08417.1 predicted protein (56918 - 52131) 25 7.4
NCU08543.1 NCU08543.1 predicted protein (54993 - 57294) 25 7.4
NCU02713.1 NCU02713.1 hypothetical protein (229535 - 228672) 25 9.7
>NCU00598.1 NCU00598.1 hypothetical protein (66148 - 66891)
Length = 222
Score = 42.7 bits (99), Expect = 3e-05
Identities = 21/57 (36%), Positives = 34/57 (58%), Gaps = 3/57 (5%)
Frame = -3
Query: 348 QVDVDELKDVAEAYNVEAMPTFLFIKDGAKVDTVVGGRKDDIHT---KIVALMGSAS 187
++DVD ++VA+ Y V AMPTFL + +G+ ++T+ G + K V L G A+
Sbjct: 43 KIDVDSQQEVAQQYGVRAMPTFLILHNGSVIETIQGANPPALTAAVDKAVKLAGGAA 99
>NCU06556.1 NCU06556.1 hypothetical protein ( (AF309689) putative
thioredoxin G6G8.7 [Neuros
Length = 107
Score = 38.9 bits (89), Expect = 5e-04
Identities = 17/34 (50%), Positives = 22/34 (64%)
Frame = -3
Query: 342 DVDELKDVAEAYNVEAMPTFLFIKDGAKVDTVVG 241
DVD L D+A+ + AMPTF+ K+G K D VG
Sbjct: 60 DVDALPDLAQELGIRAMPTFVIFKNGDKADEFVG 93
>NCU02520.1 NCU02520.1 hypothetical protein (53392 - 54482)
Length = 319
Score = 36.6 bits (83), Expect = 0.002
Identities = 14/36 (38%), Positives = 25/36 (68%)
Frame = -3
Query: 348 QVDVDELKDVAEAYNVEAMPTFLFIKDGAKVDTVVG 241
+V+VDELK + AY++ +PT + ++G ++D V G
Sbjct: 56 KVNVDELKAIKNAYSITTVPTTMLFQNGKEIDKVAG 91
>NCU09803.1 NCU09803.1 hypothetical protein (10187 - 11043)
Length = 266
Score = 33.1 bits (74), Expect = 0.027
Identities = 20/76 (26%), Positives = 36/76 (47%), Gaps = 6/76 (7%)
Frame = -3
Query: 345 VDVDELKDVAEAYNVEAMPTFLFIKDGAKVDTVVGG------RKDDIHTKIVALMGSASA 184
+D +EL +++E YNV A+P + ++ ++TV G + H K A G+
Sbjct: 65 IDAEELSEISETYNVTAVPFLVLARNNQVLETVSGSSAVKVRNAIETHAKKSAQFGT--- 121
Query: 183 *EGKSDAPLVSIRAST 136
E P ++ A+T
Sbjct: 122 -EASEKTPAIANGAAT 136
>NCU06731.1 NCU06731.1 predicted protein (15912 - 13475)
Length = 720
Score = 26.2 bits (56), Expect = 3.3
Identities = 14/52 (26%), Positives = 24/52 (45%)
Frame = +3
Query: 150 LTQEGHHSSLLRQMQNP*GPLSWYGYHPSCHRQQCPPSHHP**TGRSALPQR 305
+T + + SL R + P +W +HP QQC +G+S P++
Sbjct: 28 VTPQPSNESLGRASPSGDKPFTWRMFHPEKRYQQCSKDTQSTVSGKSVDPEQ 79
>NCU01032.1 NCU01032.1 hypothetical protein (97720 - 99132)
Length = 470
Score = 25.8 bits (55), Expect = 4.4
Identities = 12/36 (33%), Positives = 19/36 (52%)
Frame = +3
Query: 162 GHHSSLLRQMQNP*GPLSWYGYHPSCHRQQCPPSHH 269
GHH + Q+++ ++ H R+Q PPSHH
Sbjct: 45 GHHVRMQEQLRSQ--QRNYVRRHHVARRRQRPPSHH 78
>NCU08417.1 NCU08417.1 predicted protein (56918 - 52131)
Length = 1578
Score = 25.0 bits (53), Expect = 7.4
Identities = 12/33 (36%), Positives = 14/33 (42%)
Frame = +3
Query: 168 HSSLLRQMQNP*GPLSWYGYHPSCHRQQCPPSH 266
H L+Q Q HP H+ Q PPSH
Sbjct: 74 HPRHLQQQQQQQQQQQQQQQHPQQHQSQLPPSH 106
>NCU08543.1 NCU08543.1 predicted protein (54993 - 57294)
Length = 706
Score = 25.0 bits (53), Expect = 7.4
Identities = 20/65 (30%), Positives = 32/65 (48%), Gaps = 8/65 (12%)
Frame = -1
Query: 305 TLRQCRPSCLSRMVRRWTLLSVAGRMISIPR*WPSWVLHL---PKKGR-----VMPLLCQ 150
T+R+ +PS + R RR + + S R PS+ + L P+ G+ + PL+ Q
Sbjct: 218 TIRRYKPSSIPRPKRRGSGAQITQPSCSDRRQTPSFTIELVLAPQAGQSPQRPLSPLIPQ 277
Query: 149 *EPAP 135
PAP
Sbjct: 278 AMPAP 282
>NCU02713.1 NCU02713.1 hypothetical protein (229535 - 228672)
Length = 287
Score = 24.6 bits (52), Expect = 9.7
Identities = 16/59 (27%), Positives = 20/59 (33%)
Frame = +1
Query: 7 SRPRYCNSEQPVQMSEVLNSKPNHHKVXXXXXXXXXXXXXXTPGAGSY*HKRGITLPFL 183
+RP +P + SK V TPG GS RG+ LP L
Sbjct: 203 TRPSLAGERKPSSSGKSSRSKSTT-SVTTVAAAASPATLPLTPGVGSAWDMRGLNLPLL 260
Database: /phillip/Ncr/Ncr_P
Posted date: May 20, 2002 12:05 PM
Number of letters in database: 3,158,374
Number of sequences in database: 6531
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2275912
Number of Sequences: 6531
Number of extensions: 46624
Number of successful extensions: 103
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 101
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 103
length of query: 121
length of database: 3,158,374
effective HSP length: 42
effective length of query: 79
effective length of database: 2,884,072
effective search space: 227841688
effective search space used: 227841688
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)