BLASTX 2.1.3 [Apr-1-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query=
/phillip/projects/Xu/Fgr-S/seq_dir/blast_NcrP/Fgr-S_2_B03_T7.seq
(476 letters)
Database: /phillip/Ncr/Ncr_P
6531 sequences; 3,158,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
NCU01327.1 NCU01327.1 hypothetical protein (123869 - 121989) 32 0.068
NCU02102.1 NCU02102.1 hypothetical protein (12691 - 8945) 28 0.99
NCU00730.1 NCU00730.1 predicted protein (14050 - 17457) 25 1.1
NCU06871.1 NCU06871.1 hypothetical protein (11146 - 5140) 28 1.7
NCU06457.1 NCU06457.1 hypothetical protein (149960 - 151760) 27 2.2
NCU08962.1 NCU08962.1 predicted protein (14714 - 12593) 27 2.2
NCU07005.1 NCU07005.1 hypothetical protein (8679 - 7417) 27 2.9
NCU00582.1 NCU00582.1 hypothetical protein (14585 - 12249) 27 3.7
NCU09867.1 NCU09867.1 predicted protein (33577 - 37428) 26 4.9
NCU09019.1 NCU09019.1 predicted protein (5607 - 3912) 26 4.9
NCU01397.1 NCU01397.1 hypothetical protein (18283 - 19269) 26 6.4
NCU09120.1 NCU09120.1 hypothetical protein (9950 - 5720) 25 8.3
NCU09881.1 NCU09881.1 predicted protein (30927 - 29685) 25 8.3
NCU08887.1 NCU08887.1 predicted protein (19964 - 15681) 25 8.3
>NCU01327.1 NCU01327.1 hypothetical protein (123869 - 121989)
Length = 602
Score = 32.3 bits (72), Expect = 0.068
Identities = 30/127 (23%), Positives = 53/127 (41%), Gaps = 7/127 (5%)
Frame = -1
Query: 455 SSMAAGPAEALKSFEERASDXXXXXXXXXXXXLN-KDGPSETSSSAMRDLESKLDATTKE 279
S+ A+GP+E + + EE+ + + K S A+++ + A TK
Sbjct: 293 SASASGPSEQIAALEEKLARAEKAAGLAQQELADLKQNLDRVSKEAVKEGSQRASAETKL 352
Query: 278 CLAEKEQNR------KLTVENEKLQYRVSHLIRTIKEAESR*RSL**VGARKPSPILDSR 117
EKE +L + E L+ +V+ L KE + R ++L RK ++D
Sbjct: 353 RTLEKEVEEANKTKDELAKKAEALEKKVATLTTLHKEQDGRTQAL-----RKDKELVDKE 407
Query: 116 ETFISQT 96
+ QT
Sbjct: 408 VAELKQT 414
>NCU02102.1 NCU02102.1 hypothetical protein (12691 - 8945)
Length = 809
Score = 28.5 bits (62), Expect = 0.99
Identities = 11/29 (37%), Positives = 17/29 (57%)
Frame = +1
Query: 193 IVRMRWETRYWSFSFSTVSFRFCSFSARH 279
++R +W TR W++ +S R FS RH
Sbjct: 667 VIRSKWATRGWTYQEGLLSKRRLIFSDRH 695
>NCU00730.1 NCU00730.1 predicted protein (14050 - 17457)
Length = 1014
Score = 24.6 bits (52), Expect(2) = 1.1
Identities = 12/32 (37%), Positives = 14/32 (43%)
Frame = -3
Query: 447 GGGAGGSPEILRGESFRCRGTVSKAGSPAAEQ 352
GGG GG E + G S G+ S G Q
Sbjct: 827 GGGGGGGVEAMSGRSTSASGSGSGTGGERHSQ 858
Score = 21.9 bits (45), Expect(2) = 1.1
Identities = 8/13 (61%), Positives = 9/13 (68%)
Frame = -3
Query: 465 PGQVEHGGGAGGS 427
P Q E GGG GG+
Sbjct: 809 PNQEEKGGGGGGA 821
>NCU06871.1 NCU06871.1 hypothetical protein (11146 - 5140)
Length = 1955
Score = 27.7 bits (60), Expect = 1.7
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = -2
Query: 148 LVNLVLFWIRERRSSRKPVYVLR 80
L +++LFW+R R R P+Y L+
Sbjct: 1823 LHSVILFWLRPSRQIRAPIYSLK 1845
>NCU06457.1 NCU06457.1 hypothetical protein (149960 - 151760)
Length = 580
Score = 27.3 bits (59), Expect = 2.2
Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Frame = -1
Query: 350 DGPS--ETSSSAMRDLESKLDATTKECLAEKEQNRKLTVENEKLQYRVSHL 204
DGP+ E + SAM+ ++D K+ EKE +K E E+ Q R+ +L
Sbjct: 68 DGPTWEEAAKSAMKKAVGRVDQYKKKLQKEKEALKK---EEEERQQRLKNL 115
>NCU08962.1 NCU08962.1 predicted protein (14714 - 12593)
Length = 684
Score = 27.3 bits (59), Expect = 2.2
Identities = 25/96 (26%), Positives = 43/96 (44%), Gaps = 1/96 (1%)
Frame = -1
Query: 461 GRSSMAAGPAEALKSFEERASDXXXXXXXXXXXXLNK-DGPSETSSSAMRDLESKLDATT 285
G +++A P+ A EE A L+K + SE+ M L+S+LD T
Sbjct: 68 GTNNIAKEPSSADLEREEAARAETLAIIEDLKERLSKAEASSESHKRQMDILQSRLDDAT 127
Query: 284 KECLAEKEQNRKLTVENEKLQYRVSHLIRTIKEAES 177
+E +E+ + + E L+ + R ++E ES
Sbjct: 128 REQAKLEEKVHENEEQIEALKNEKREISRQMREMES 163
>NCU07005.1 NCU07005.1 hypothetical protein (8679 - 7417)
Length = 420
Score = 26.9 bits (58), Expect = 2.9
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = -2
Query: 124 IRERRSSRKPVYVLRLDDCWSWFKLS 47
+ R S RK Y+ + + W+WFK S
Sbjct: 228 LANRESPRKDWYISQTVEAWNWFKQS 253
>NCU00582.1 NCU00582.1 hypothetical protein (14585 - 12249)
Length = 745
Score = 26.6 bits (57), Expect = 3.7
Identities = 13/38 (34%), Positives = 19/38 (49%)
Frame = -3
Query: 465 PGQVEHGGGAGGSPEILRGESFRCRGTVSKAGSPAAEQ 352
PG + G+GGSP+ G + + AGS A+Q
Sbjct: 596 PGSSDSHSGSGGSPDGSGGGNIPSESNCAAAGSGQAQQ 633
>NCU09867.1 NCU09867.1 predicted protein (33577 - 37428)
Length = 1283
Score = 26.2 bits (56), Expect = 4.9
Identities = 15/35 (42%), Positives = 20/35 (56%)
Frame = -3
Query: 471 RPPGQVEHGGGAGGSPEILRGESFRCRGTVSKAGS 367
R PG++E G G G+ E RGES +S +GS
Sbjct: 693 RKPGEIEGGSGV-GNEEFNRGESVSFVPGMSGSGS 726
>NCU09019.1 NCU09019.1 predicted protein (5607 - 3912)
Length = 65
Score = 26.2 bits (56), Expect = 4.9
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = -3
Query: 102 ANLSMCSVLTTVGVGLNCHSEVDEMCLVPRP 10
A+ +C + T+ + C E+CLVPRP
Sbjct: 10 ADSILCYRICTISYRVGCWDYSIEVCLVPRP 40
>NCU01397.1 NCU01397.1 hypothetical protein (18283 - 19269)
Length = 328
Score = 25.8 bits (55), Expect = 6.4
Identities = 15/40 (37%), Positives = 17/40 (42%)
Frame = -3
Query: 471 RPPGQVEHGGGAGGSPEILRGESFRCRGTVSKAGSPAAEQ 352
RPP VE GG + E R +A S AAEQ
Sbjct: 108 RPPPPVEQSSSGGGKKRNRQKERLARRQAEVEAASAAAEQ 147
>NCU09120.1 NCU09120.1 hypothetical protein (9950 - 5720)
Length = 1374
Score = 25.4 bits (54), Expect = 8.3
Identities = 16/53 (30%), Positives = 22/53 (41%)
Frame = -3
Query: 279 MSC*EGTEPEADRGEREAPVSCLPSHPDNQRGGVKIEKPLISWSS*T*SYFGF 121
+ C +G + EAD P+ L + G +K E PL W S GF
Sbjct: 922 IECEDGFKVEADFVVNTIPLGVL------KHGNIKFEPPLPEWKSSAIERIGF 968
>NCU09881.1 NCU09881.1 predicted protein (30927 - 29685)
Length = 366
Score = 25.4 bits (54), Expect = 8.3
Identities = 9/16 (56%), Positives = 12/16 (74%)
Frame = -3
Query: 468 PPGQVEHGGGAGGSPE 421
PP Q ++GGG GG P+
Sbjct: 171 PPPQQQYGGGHGGVPD 186
>NCU08887.1 NCU08887.1 predicted protein (19964 - 15681)
Length = 1067
Score = 25.4 bits (54), Expect = 8.3
Identities = 11/19 (57%), Positives = 11/19 (57%)
Frame = -3
Query: 447 GGGAGGSPEILRGESFRCR 391
GGG GGS RG S R R
Sbjct: 832 GGGGGGSTRTARGSSSRAR 850
Database: /phillip/Ncr/Ncr_P
Posted date: May 20, 2002 12:05 PM
Number of letters in database: 3,158,374
Number of sequences in database: 6531
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2805342
Number of Sequences: 6531
Number of extensions: 56560
Number of successful extensions: 210
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 199
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 210
length of query: 158
length of database: 3,158,374
effective HSP length: 42
effective length of query: 116
effective length of database: 2,884,072
effective search space: 334552352
effective search space used: 334552352
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)