BLASTX 2.1.3 [Apr-1-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query=
/phillip/projects/Xu/Fgr-S/seq_dir/blast_NcrP/Fgr-S_2_D08_T7.seq
(502 letters)
Database: /phillip/Ncr/Ncr_P
6531 sequences; 3,158,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
NCU00930.1 NCU00930.1 hypothetical protein (69013 - 68488) 54 2e-08
NCU00198.1 NCU00198.1 hypothetical protein (1143 - 1944) 30 0.36
NCU09050.1 NCU09050.1 hypothetical protein (15114 - 13096) 25 8.9
NCU10027.1 NCU10027.1 hypothetical protein (4415 - 7430) 25 8.9
>NCU00930.1 NCU00930.1 hypothetical protein (69013 - 68488)
Length = 90
Score = 53.9 bits (128), Expect = 2e-08
Identities = 20/58 (34%), Positives = 38/58 (65%)
Frame = -1
Query: 439 EKEMEYRVELFNRLTHVCFEKCIEKRHKEGELNMGENSCIDRCVSKYWQVTNIVGGML 266
E E++ E+ +R+ +C KCI+K ++EG+L+ GE+ C+DRC +K+++ + L
Sbjct: 19 ENELKVVAEMHSRMVKICTLKCIDKSYREGDLSKGESVCLDRCAAKFFETHQKISDQL 76
>NCU00198.1 NCU00198.1 hypothetical protein (1143 - 1944)
Length = 88
Score = 30.0 bits (66), Expect = 0.36
Identities = 17/73 (23%), Positives = 33/73 (44%)
Frame = -1
Query: 463 KEMMFGMAEKEMEYRVELFNRLTHVCFEKCIEKRHKEGELNMGENSCIDRCVSKYWQVTN 284
+E+ + +++++ + +F L CF C++ + L+ E+ CI RCV K
Sbjct: 10 RELDQRLQKRQVKEFMSVFGNLVDNCFTACVDDFTSKA-LSGRESGCISRCVLKSMSTQT 68
Query: 283 IVGGMLGTQQTPM 245
+G G M
Sbjct: 69 RLGERFGELNAAM 81
>NCU09050.1 NCU09050.1 hypothetical protein (15114 - 13096)
Length = 597
Score = 25.4 bits (54), Expect = 8.9
Identities = 11/36 (30%), Positives = 18/36 (49%), Gaps = 1/36 (2%)
Frame = -1
Query: 361 HKEGELN-MGENSCIDRCVSKYWQVTNIVGGMLGTQ 257
H+ N +G N+CI + W+V ++ G G Q
Sbjct: 327 HRHPPFNGLGSNTCIQDAFNLAWKVDYVMSGKAGKQ 362
>NCU10027.1 NCU10027.1 hypothetical protein (4415 - 7430)
Length = 918
Score = 25.4 bits (54), Expect = 8.9
Identities = 15/41 (36%), Positives = 23/41 (55%)
Frame = +3
Query: 369 SMHFSKQTCVSRLKSSTRYSISFSAIPNIISFSSSLRNLPG 491
++ + + TC L SST Y I+F+ IPN+ + SL G
Sbjct: 643 AVKYRQWTC---LLSSTAYIIAFAVIPNLQNSLFSLEKRHG 680
Database: /phillip/Ncr/Ncr_P
Posted date: May 20, 2002 12:05 PM
Number of letters in database: 3,158,374
Number of sequences in database: 6531
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3053798
Number of Sequences: 6531
Number of extensions: 66997
Number of successful extensions: 173
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 169
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 173
length of query: 167
length of database: 3,158,374
effective HSP length: 42
effective length of query: 124
effective length of database: 2,884,072
effective search space: 357624928
effective search space used: 357624928
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)