BLASTX 2.1.3 [Apr-1-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query=
/phillip/projects/Xu/Fgr-S/seq_dir/blast_NcrP/Fgr-S_2_E08_T7.seq
(350 letters)
Database: /phillip/Ncr/Ncr_P
6531 sequences; 3,158,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
NCU00413.1 NCU00413.1 hypothetical protein ( (AF440009) 60S ribo... 105 3e-24
NCU02757.1 NCU02757.1 hypothetical protein (25925 - 24499) 37 0.002
NCU00344.1 NCU00344.1 hypothetical protein (460479 - 456913) 28 0.82
NCU09669.1 NCU09669.1 predicted protein (14149 - 14716) 27 1.4
NCU09458.1 NCU09458.1 hypothetical protein (17168 - 15243) 27 1.4
NCU08624.1 NCU08624.1 hypothetical protein (51587 - 50088) 27 1.4
NCU06480.1 NCU06480.1 predicted protein (7958 - 9101) 27 1.8
NCU00269.1 NCU00269.1 hypothetical protein (169581 - 172623) 27 2.4
NCU08525.1 NCU08525.1 hypothetical protein (14857 - 12881) 26 4.1
NCU02111.1 NCU02111.1 hypothetical protein (39586 - 43512) 26 4.1
NCU08509.1 NCU08509.1 predicted protein (72898 - 76135) 25 5.3
NCU09509.1 NCU09509.1 predicted protein (44295 - 42949) 25 5.3
NCU02053.1 NCU02053.1 hypothetical protein (14246 - 10203) 25 7.0
NCU08357.1 NCU08357.1 hypothetical protein (81139 - 78729) 25 7.0
NCU07699.1 NCU07699.1 hypothetical protein (29935 - 27310) 25 9.1
>NCU00413.1 NCU00413.1 hypothetical protein ( (AF440009) 60S
ribosomal protein L2 [Talaromyc
Length = 90
Score = 105 bits (263), Expect = 3e-24
Identities = 48/64 (75%), Positives = 54/64 (84%)
Frame = +1
Query: 7 SRPRYRVKRNSWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLIAARRTG 186
++ ++ VKRNSWPK RGVAMNPV+HPHGGGNHQHIG AST+ R A GQK GLIAARRTG
Sbjct: 21 AKHKFAVKRNSWPKTRGVAMNPVDHPHGGGNHQHIGKASTISRYAAQGQKAGLIAARRTG 80
Query: 187 RLRG 198
LRG
Sbjct: 81 LLRG 84
>NCU02757.1 NCU02757.1 hypothetical protein (25925 - 24499)
Length = 354
Score = 37.0 bits (84), Expect = 0.002
Identities = 18/39 (46%), Positives = 23/39 (58%)
Frame = +1
Query: 34 NSWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPG 150
N P VRG+AMN +HPHGGG + + R+DA G
Sbjct: 312 NIRPTVRGLAMNANDHPHGGGRGRQFEGSVYHRKDAMCG 350
>NCU00344.1 NCU00344.1 hypothetical protein (460479 - 456913)
Length = 874
Score = 28.1 bits (61), Expect = 0.82
Identities = 14/44 (31%), Positives = 20/44 (44%), Gaps = 4/44 (9%)
Frame = +1
Query: 37 SWPKVRGVAMNPVEHPHGGGNHQH----IGHASTVRRDAPPGQK 156
+W V G+ MNP H GG Q +GH+ + GQ+
Sbjct: 721 AWASVGGMGMNPPGHGQGGHQGQQGGQGLGHSQQGHQQGGQGQQ 764
>NCU09669.1 NCU09669.1 predicted protein (14149 - 14716)
Length = 165
Score = 27.3 bits (59), Expect = 1.4
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = -3
Query: 117 VTNMLVVTSSVGMLHRVHGHTTHLRPGVPLHAVPRP 10
+ N L + + +G+L V TH+RPG + + RP
Sbjct: 1 MANTLRLLAQLGLLEAVEASGTHMRPGTVVTSDGRP 36
>NCU09458.1 NCU09458.1 hypothetical protein (17168 - 15243)
Length = 594
Score = 27.3 bits (59), Expect = 1.4
Identities = 14/27 (51%), Positives = 16/27 (58%), Gaps = 3/27 (11%)
Frame = +1
Query: 97 NHQHIGHASTVRRDA---PPGQKVGLI 168
N H HAST+R D P G K+GLI
Sbjct: 76 NATHKSHASTIREDGVEYPTGLKLGLI 102
>NCU08624.1 NCU08624.1 hypothetical protein (51587 - 50088)
Length = 428
Score = 27.3 bits (59), Expect = 1.4
Identities = 13/38 (34%), Positives = 17/38 (44%)
Frame = +1
Query: 1 AWSRPRYRVKRNSWPKVRGVAMNPVEHPHGGGNHQHIG 114
AW R+ N+W G A+N E G GN + G
Sbjct: 353 AWMDGRFVELDNAWEGFEGAAVNDAEMKEGVGNKEKNG 390
>NCU06480.1 NCU06480.1 predicted protein (7958 - 9101)
Length = 212
Score = 26.9 bits (58), Expect = 1.8
Identities = 17/54 (31%), Positives = 26/54 (47%), Gaps = 1/54 (1%)
Frame = -3
Query: 177 PGSDETNLLARWCITADSGSVTNMLVVTSSVGM-LHRVHGHTTHLRPGVPLHAV 19
P + LL+ I + +VT + S GM L++ H T L PG PL+ +
Sbjct: 55 PQHSLSRLLSPASIQCEEHTVTTEAIDMPSPGMSLNKFLQHLTELSPGAPLNCI 108
>NCU00269.1 NCU00269.1 hypothetical protein (169581 - 172623)
Length = 954
Score = 26.6 bits (57), Expect = 2.4
Identities = 17/51 (33%), Positives = 21/51 (40%)
Frame = -3
Query: 162 TNLLARWCITADSGSVTNMLVVTSSVGMLHRVHGHTTHLRPGVPLHAVPRP 10
TNL A W +T DS + + GHT RP P VP+P
Sbjct: 569 TNLPAGWFVTTDS----------TGKYYFYDKSGHTQWQRPTTPAVDVPKP 609
>NCU08525.1 NCU08525.1 hypothetical protein (14857 - 12881)
Length = 658
Score = 25.8 bits (55), Expect = 4.1
Identities = 15/41 (36%), Positives = 18/41 (43%), Gaps = 1/41 (2%)
Frame = +1
Query: 7 SRPRYRVKRNSWPKVRGVAMNPVEHPHGGGNHQHIG-HAST 126
S PRY+ S P + H + GG H H G H ST
Sbjct: 6 SHPRYQAVARSEPYPSSANRSGGGHNNHGGGHGHSGRHGST 46
>NCU02111.1 NCU02111.1 hypothetical protein (39586 - 43512)
Length = 1235
Score = 25.8 bits (55), Expect = 4.1
Identities = 9/19 (47%), Positives = 14/19 (73%)
Frame = -3
Query: 57 TTHLRPGVPLHAVPRPRPR 1
T H +PG P ++V RP+P+
Sbjct: 953 TVHTQPGEPPNSVSRPQPK 971
>NCU08509.1 NCU08509.1 predicted protein (72898 - 76135)
Length = 810
Score = 25.4 bits (54), Expect = 5.3
Identities = 11/36 (30%), Positives = 12/36 (32%)
Frame = +1
Query: 43 PKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPG 150
P G P GG H H GH + P G
Sbjct: 687 PSRNGTPTTTSYPPGGGSGHHHQGHQQNPHQQGPNG 722
>NCU09509.1 NCU09509.1 predicted protein (44295 - 42949)
Length = 269
Score = 25.4 bits (54), Expect = 5.3
Identities = 17/61 (27%), Positives = 25/61 (40%)
Frame = +1
Query: 16 RYRVKRNSWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLIAARRTGRLR 195
+Y R WPKV A+ + GG H G P + G++ A++TG
Sbjct: 112 QYSADRIVWPKVWTRAIQALLVRWPGGQHGRTG---------PDSRGEGVLEAKQTGSAE 162
Query: 196 G 198
G
Sbjct: 163 G 163
>NCU02053.1 NCU02053.1 hypothetical protein (14246 - 10203)
Length = 1347
Score = 25.0 bits (53), Expect = 7.0
Identities = 14/45 (31%), Positives = 19/45 (42%), Gaps = 1/45 (2%)
Frame = +1
Query: 4 WSRPRYRVKRNSWPKVRGVA-MNPVEHPHGGGNHQHIGHASTVRR 135
W R ++R WP A + P GGG + A+ VRR
Sbjct: 1137 WGRTNRDLRRIHWPGPPTKATLKSAAVPAGGGGQMKVTDAAAVRR 1181
>NCU08357.1 NCU08357.1 hypothetical protein (81139 - 78729)
Length = 732
Score = 25.0 bits (53), Expect = 7.0
Identities = 14/40 (35%), Positives = 18/40 (45%)
Frame = +1
Query: 28 KRNSWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPP 147
+ S P GV P H G NH+H AS+ +PP
Sbjct: 567 QNTSLPNPSGVFAPPSPF-HNGTNHRHRDSASSFTAPSPP 605
>NCU07699.1 NCU07699.1 hypothetical protein (29935 - 27310)
Length = 737
Score = 24.6 bits (52), Expect = 9.1
Identities = 10/22 (45%), Positives = 13/22 (58%)
Frame = -2
Query: 133 GGQWKRDQYAGGYLLRGDAPQG 68
GG + R + G Y RG AP+G
Sbjct: 500 GGYYGRGAFRGAYRARGFAPRG 521
Database: /phillip/Ncr/Ncr_P
Posted date: May 20, 2002 12:05 PM
Number of letters in database: 3,158,374
Number of sequences in database: 6531
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2545986
Number of Sequences: 6531
Number of extensions: 57069
Number of successful extensions: 171
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 166
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 170
length of query: 116
length of database: 3,158,374
effective HSP length: 42
effective length of query: 74
effective length of database: 2,884,072
effective search space: 213421328
effective search space used: 213421328
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)