BLASTX 2.1.3 [Apr-1-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query=
/phillip/projects/Xu/Fgr-S/seq_dir/blast_NcrP/Fgr-S_3_B06_T7.seq
         (373 letters)

Database: /phillip/Ncr/Ncr_P
           6531 sequences; 3,158,374 total letters

Searching..................................................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

NCU01181.1 NCU01181.1 hypothetical protein (88137 - 89629)             35  0.006
NCU02324.1 NCU02324.1 predicted protein (10636 - 14607)                27  2.0
NCU06403.1 NCU06403.1 hypothetical protein (93919 - 96096)             26  4.5

>NCU01181.1 NCU01181.1 hypothetical protein (88137 - 89629)
          Length = 451

 Score = 35.4 bits (80), Expect = 0.006
 Identities = 16/26 (61%), Positives = 20/26 (76%)
 Frame = +1

Query: 25  RTLRLADGPDEVHLGTIAKLELQRAR 102
           RTLRLADGPDEVHL  + + E +R +
Sbjct: 390 RTLRLADGPDEVHLQQMGRNENKRGK 415



>NCU02324.1 NCU02324.1 predicted protein (10636 - 14607)
          Length = 1272

 Score = 26.9 bits (58), Expect = 2.0
 Identities = 11/38 (28%), Positives = 20/38 (51%)
 Frame = -2

Query: 237 CTWRRNLTPLIHHAIYP*LIMSLTDLLQRLAVPLLLNL 124
           C W + +T   H  ++P +I +L  +L R    LL ++
Sbjct: 499 CKWTKGITAPTHRGVHPGIIYTLEMMLNRYDPVLLADM 536



>NCU06403.1 NCU06403.1 hypothetical protein (93919 - 96096)
          Length = 672

 Score = 25.8 bits (55), Expect = 4.5
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = -2

Query: 126 LDLIVFLQPCPLQLQLRDRAEMDFIRAVSEPQCP 25
           +D IV L+P   Q    D+ E   + AVSEP  P
Sbjct: 15  IDRIVGLEPGSTQDAEHDQQETGLLTAVSEPPSP 48



  Database: /phillip/Ncr/Ncr_P
    Posted date:  May 20, 2002 12:05 PM
  Number of letters in database: 3,158,374
  Number of sequences in database:  6531
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2448358
Number of Sequences: 6531
Number of extensions: 53023
Number of successful extensions: 121
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 121
length of query: 124
length of database: 3,158,374
effective HSP length: 42
effective length of query: 81
effective length of database: 2,884,072
effective search space: 233609832
effective search space used: 233609832
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)