BLASTX 2.1.3 [Apr-1-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query=
/phillip/projects/Xu/Fgr-S/seq_dir/blast_NcrP/Fgr-S_3_D05_T7.seq
(276 letters)
Database: /phillip/Ncr/Ncr_P
6531 sequences; 3,158,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
NCU02214.1 NCU02214.1 hypothetical protein (8859 - 5717) 32 0.031
NCU07532.1 NCU07532.1 predicted protein (35712 - 33691) 27 1.7
NCU07002.1 NCU07002.1 hypothetical protein (184472 - 192193) 26 2.9
NCU08879.1 NCU08879.1 hypothetical protein (5157 - 1627) 26 2.9
NCU07262.1 NCU07262.1 hypothetical protein (37046 - 38929) 25 4.9
NCU07839.1 NCU07839.1 hypothetical protein (73227 - 75693) 25 4.9
NCU09282.1 NCU09282.1 hypothetical protein (49113 - 46748) 25 6.4
NCU09676.1 NCU09676.1 predicted protein (31703 - 33053) 25 6.4
NCU07141.1 NCU07141.1 predicted protein (100398 - 101665) 25 6.4
NCU02523.1 NCU02523.1 predicted protein (64108 - 65417) 24 8.4
NCU09986.1 NCU09986.1 predicted protein (2110 - 1694) 24 8.4
>NCU02214.1 NCU02214.1 hypothetical protein (8859 - 5717)
Length = 1018
Score = 32.3 bits (72), Expect = 0.031
Identities = 15/34 (44%), Positives = 17/34 (49%)
Frame = +1
Query: 19 YHTPTIYLPQNSHHTYLLCHSHSHSEIYCHATFH 120
YH T + N HH YLL H H H + HA H
Sbjct: 894 YHIGTHHNSHN-HHNYLLHHHHHHPHAHAHAHAH 926
>NCU07532.1 NCU07532.1 predicted protein (35712 - 33691)
Length = 502
Score = 26.6 bits (57), Expect = 1.7
Identities = 9/24 (37%), Positives = 15/24 (62%)
Frame = +1
Query: 49 NSHHTYLLCHSHSHSEIYCHATFH 120
++H + HSH+HS + H+ FH
Sbjct: 262 HAHSSMSHSHSHTHSHTHTHSHFH 285
Score = 24.3 bits (51), Expect = 8.4
Identities = 13/50 (26%), Positives = 20/50 (40%), Gaps = 10/50 (20%)
Frame = +1
Query: 13 PRYHTPTIYLPQN----------SHHTYLLCHSHSHSEIYCHATFHRSVH 132
P+ T T ++ N +H + HSHSH+ + H H H
Sbjct: 238 PKERTTTYFVQDNILMRISSISHAHAHSSMSHSHSHTHSHTHTHSHFHSH 287
>NCU07002.1 NCU07002.1 hypothetical protein (184472 - 192193)
Length = 2573
Score = 25.8 bits (55), Expect = 2.9
Identities = 11/29 (37%), Positives = 16/29 (54%)
Frame = -3
Query: 124 NGGKLHGNISRNGYGNDIIGRYGGCFEEG 38
+GG G+++ GYG+ G GG E G
Sbjct: 2347 HGGHSRGDVNGEGYGSSSRGGAGGDHERG 2375
>NCU08879.1 NCU08879.1 hypothetical protein (5157 - 1627)
Length = 1147
Score = 25.8 bits (55), Expect = 2.9
Identities = 16/31 (51%), Positives = 17/31 (54%)
Frame = +3
Query: 30 HHLPSSKQPPYLPIMSFP*PFRDILPCNFPP 122
H LPSS Q P LP P RDI P + PP
Sbjct: 610 HELPSSSQLPALPA-----PSRDI-PSSSPP 634
>NCU07262.1 NCU07262.1 hypothetical protein (37046 - 38929)
Length = 604
Score = 25.0 bits (53), Expect = 4.9
Identities = 12/38 (31%), Positives = 17/38 (44%)
Frame = +1
Query: 19 YHTPTIYLPQNSHHTYLLCHSHSHSEIYCHATFHRSVH 132
+H + +L + H HSHSHS + H H H
Sbjct: 16 HHLASDHLRSHGHGHDHCDHSHSHSHGHSHDHSHGHAH 53
>NCU07839.1 NCU07839.1 hypothetical protein (73227 - 75693)
Length = 651
Score = 25.0 bits (53), Expect = 4.9
Identities = 12/27 (44%), Positives = 14/27 (51%)
Frame = -3
Query: 133 YERNGGKLHGNISRNGYGNDIIGRYGG 53
Y+RNGG N S +G N G GG
Sbjct: 24 YDRNGGGYSNNYSSHGGSNGYGGGGGG 50
>NCU09282.1 NCU09282.1 hypothetical protein (49113 - 46748)
Length = 741
Score = 24.6 bits (52), Expect = 6.4
Identities = 15/36 (41%), Positives = 16/36 (43%), Gaps = 3/36 (8%)
Frame = -3
Query: 136 SYERNGGKLHGNISRNGYGN---DIIGRYGGCFEEG 38
+Y R G HG G N D RY CFEEG
Sbjct: 697 TYRRIGIIHHGREGYKGVENAREDFWERYPSCFEEG 732
>NCU09676.1 NCU09676.1 predicted protein (31703 - 33053)
Length = 425
Score = 24.6 bits (52), Expect = 6.4
Identities = 13/44 (29%), Positives = 21/44 (47%), Gaps = 9/44 (20%)
Frame = +1
Query: 49 NSHHTYLLCHSHSHSE---------IYCHATFHRSVHMTRITFV 153
+SHH++ SHSHS I T+H S++ T++
Sbjct: 261 HSHHSHSHSQSHSHSRSPSLHSSNGIPKQLTYHNSIYCQYATYL 304
>NCU07141.1 NCU07141.1 predicted protein (100398 - 101665)
Length = 397
Score = 24.6 bits (52), Expect = 6.4
Identities = 9/33 (27%), Positives = 17/33 (51%)
Frame = +1
Query: 52 SHHTYLLCHSHSHSEIYCHATFHRSVHMTRITF 150
SH+ Y L H +++ + R+ H T++ F
Sbjct: 152 SHYLYALIHGYTYKFVQAPTYQDRAPHWTKVIF 184
>NCU02523.1 NCU02523.1 predicted protein (64108 - 65417)
Length = 353
Score = 24.3 bits (51), Expect = 8.4
Identities = 11/37 (29%), Positives = 16/37 (42%), Gaps = 1/37 (2%)
Frame = +1
Query: 13 PRYHTPTIYLPQNSH-HTYLLCHSHSHSEIYCHATFH 120
P +H P +Y P +H H H+ H + H H
Sbjct: 121 PPHHAPPVYAPMPAHPHHNHEDHNREHHNLKHHVHEH 157
>NCU09986.1 NCU09986.1 predicted protein (2110 - 1694)
Length = 138
Score = 24.3 bits (51), Expect = 8.4
Identities = 12/42 (28%), Positives = 21/42 (49%), Gaps = 1/42 (2%)
Frame = +1
Query: 10 RPRYHTPTIYLPQNSHHTYLLCHSHSHSEIYCHATF-HRSVH 132
R R P + ++HH + H+H H ++ H + H +VH
Sbjct: 80 RGRQRDPVVRF--DAHHQHQHQHTHHHPQLQHHHHYQHHTVH 119
Database: /phillip/Ncr/Ncr_P
Posted date: May 20, 2002 12:05 PM
Number of letters in database: 3,158,374
Number of sequences in database: 6531
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2061841
Number of Sequences: 6531
Number of extensions: 42893
Number of successful extensions: 163
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 154
length of query: 92
length of database: 3,158,374
effective HSP length: 39
effective length of query: 52
effective length of database: 2,903,665
effective search space: 150990580
effective search space used: 150990580
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)