BLASTX 2.1.3 [Apr-1-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query=
/phillip/projects/Xu/Fgr-S/seq_dir/blast_NcrP/Fgr-S_3_F09_T7.seq
         (434 letters)

Database: /phillip/Ncr/Ncr_P
           6531 sequences; 3,158,374 total letters

Searching..................................................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

NCU08411.1 NCU08411.1 hypothetical protein (39691 - 38019)            142  4e-35
NCU07941.1 NCU07941.1 hypothetical protein (133821 - 131969)          130  1e-31
NCU07419.1 NCU07419.1 hypothetical protein (25129 - 23274)             32  0.078
NCU08600.1 NCU08600.1 predicted protein (14412 - 19583)                27  3.3
NCU00679.1 NCU00679.1 hypothetical protein (361425 - 363988)           25  9.6

>NCU08411.1 NCU08411.1 hypothetical protein (39691 - 38019)
          Length = 429

 Score =  142 bits (358), Expect = 4e-35
 Identities = 68/134 (50%), Positives = 93/134 (68%)
 Frame = +3

Query: 21  RVGALSIVCGSADIAVKVESQLKLVIRPMYSNPPLHGASIVATILKDSAMFDEWTLELKA 200
           RVGA SIVC  AD   +V+SQ+K+++RP+YSNPP+HGA I A IL    ++++W  E+K 
Sbjct: 286 RVGAFSIVCADADEKKRVDSQVKILVRPLYSNPPIHGARIAAEILNTPELYEQWLTEVKE 345

Query: 201 MADRIISMREQLFNALKIRETPGDWSHIIKQIGMFTFTGLNSDQVAFMRQEYHIYMTSDG 380
           MADRII MR  L   L+   +  DWSHI  QIGMF +TGL  +Q+  + +E+ +Y T DG
Sbjct: 346 MADRIIKMRALLKENLEKLGSKHDWSHITSQIGMFAYTGLTPEQMEKLAKEHSVYATKDG 405

Query: 381 RISMAGLSSRTVPR 422
           RIS+AG++S  V R
Sbjct: 406 RISVAGITSENVGR 419



>NCU07941.1 NCU07941.1 hypothetical protein (133821 - 131969)
          Length = 482

 Score =  130 bits (328), Expect = 1e-31
 Identities = 64/122 (52%), Positives = 85/122 (69%)
 Frame = +3

Query: 51  SADIAVKVESQLKLVIRPMYSNPPLHGASIVATILKDSAMFDEWTLELKAMADRIISMRE 230
           +A I  +V SQL L+ R   SNPP++GA + + +L D A+F EW   L+ M+ RII MR+
Sbjct: 346 AASITTRVASQLTLLQRSEISNPPIYGAKVASIVLNDPALFAEWKENLRTMSGRIIDMRK 405

Query: 231 QLFNALKIRETPGDWSHIIKQIGMFTFTGLNSDQVAFMRQEYHIYMTSDGRISMAGLSSR 410
            L   L+   TPG W+HI  QIGMF+FTGLN  QVA +R+E+HIYMT +GRISMAGL+ +
Sbjct: 406 ALRAKLEELGTPGPWNHITDQIGMFSFTGLNEKQVAKLREEFHIYMTKNGRISMAGLNKK 465

Query: 411 TV 416
            V
Sbjct: 466 NV 467



>NCU07419.1 NCU07419.1 hypothetical protein (25129 - 23274)
          Length = 511

 Score = 32.0 bits (71), Expect = 0.078
 Identities = 15/40 (37%), Positives = 21/40 (52%)
 Frame = +3

Query: 177 EWTLELKAMADRIISMREQLFNALKIRETPGDWSHIIKQI 296
           EW LE  A A R+   RE + +A +I   P  W H++  I
Sbjct: 359 EWLLEFHAEARRLPECREGICHAGEILHVPSGWWHLVVNI 398



>NCU08600.1 NCU08600.1 predicted protein (14412 - 19583)
          Length = 1276

 Score = 26.6 bits (57), Expect = 3.3
 Identities = 21/76 (27%), Positives = 30/76 (38%), Gaps = 1/76 (1%)
 Frame = -1

Query: 323  VEPSESKHPNLLNDVGPISRCFSDF-QRIKKLLPHANYPISHGLQLQSPFVEHRTVLKYG 147
            V+   +  P  L    P +R  S   Q     LP    P++HG  +QSP       +K  
Sbjct: 1029 VDTGHNFKPLSLTTPSPYARSTSSLGQSSTSKLPQTRSPLTHGSDVQSP------TIKRS 1082

Query: 146  SHDRSTMKRRVRIHRP 99
            +   S +  R RI  P
Sbjct: 1083 NATASKLSFRERISSP 1098



>NCU00679.1 NCU00679.1 hypothetical protein (361425 - 363988)
          Length = 690

 Score = 25.0 bits (53), Expect = 9.6
 Identities = 10/29 (34%), Positives = 14/29 (47%)
 Frame = +3

Query: 237 FNALKIRETPGDWSHIIKQIGMFTFTGLN 323
           F +  +RE P DW H I   G    T ++
Sbjct: 304 FRSRTLREKPDDWEHHIYSFGSIEETAVS 332



  Database: /phillip/Ncr/Ncr_P
    Posted date:  May 20, 2002 12:05 PM
  Number of letters in database: 3,158,374
  Number of sequences in database:  6531
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2686811
Number of Sequences: 6531
Number of extensions: 52977
Number of successful extensions: 124
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 124
length of query: 144
length of database: 3,158,374
effective HSP length: 42
effective length of query: 102
effective length of database: 2,884,072
effective search space: 294175344
effective search space used: 294175344
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)