BLASTX 2.1.3 [Apr-1-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query=
/phillip/projects/Xu/Fgr-S/seq_dir/blast_NcrP/Fgr-S_3_H04_T7.seq
(311 letters)
Database: /phillip/Ncr/Ncr_P
6531 sequences; 3,158,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
NCU01545.1 NCU01545.1 hypothetical protein ( probable autophagy ... 127 6e-31
NCU08899.1 NCU08899.1 hypothetical protein (65520 - 68980) 26 2.6
NCU01495.1 NCU01495.1 hypothetical protein (23085 - 20167) 25 4.4
NCU07605.1 NCU07605.1 hypothetical protein (81057 - 86134) 25 4.4
NCU07125.1 NCU07125.1 hypothetical protein (45325 - 42170) 25 7.5
NCU08764.1 NCU08764.1 predicted protein (41893 - 42890) 24 9.8
NCU08756.1 NCU08756.1 predicted protein (18409 - 19931) 24 9.8
>NCU01545.1 NCU01545.1 hypothetical protein ( probable autophagy
protein - fission yeast (S
Length = 121
Score = 127 bits (320), Expect = 6e-31
Identities = 59/71 (83%), Positives = 68/71 (95%)
Frame = +1
Query: 10 RPRYLVPADLTVGQFVYVVRKRIKLSPEKAIFVFVNSTLPPTASLMSAIYEENKDEDGFL 189
+ +YLVPADLTVGQFVYV+RKRIKLSPEKAIF+FV+ LPPTA+LMS+IYEE+KDEDGFL
Sbjct: 46 KKKYLVPADLTVGQFVYVIRKRIKLSPEKAIFIFVDEVLPPTAALMSSIYEEHKDEDGFL 105
Query: 190 YMTYSGENTFG 222
Y+TYSGENTFG
Sbjct: 106 YITYSGENTFG 116
>NCU08899.1 NCU08899.1 hypothetical protein (65520 - 68980)
Length = 878
Score = 26.2 bits (56), Expect = 2.6
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = +2
Query: 158 MKKTRTRTASCT*LTVARTLSALPNPCALP 247
+K+ R+ C+ T+AR L+A PN LP
Sbjct: 142 VKEERSGAIECSPATIARGLAAPPNSTILP 171
>NCU01495.1 NCU01495.1 hypothetical protein (23085 - 20167)
Length = 902
Score = 25.4 bits (54), Expect = 4.4
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = +2
Query: 200 TVARTLSALPNPCALPL*INEWMFRL 277
T+ RT + LP+PC P E++ +L
Sbjct: 431 TLPRTTATLPSPCLTPKGFAEFLIKL 456
>NCU07605.1 NCU07605.1 hypothetical protein (81057 - 86134)
Length = 1282
Score = 25.4 bits (54), Expect = 4.4
Identities = 12/26 (46%), Positives = 14/26 (53%), Gaps = 1/26 (3%)
Frame = -2
Query: 256 YLQWQRTWIRQSRK-CSRHCKSCTGS 182
Y WQRT K C +HC+ TGS
Sbjct: 63 YFTWQRTGCDCVVKFCPQHCRELTGS 88
>NCU07125.1 NCU07125.1 hypothetical protein (45325 - 42170)
Length = 1006
Score = 24.6 bits (52), Expect = 7.5
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = -2
Query: 187 GSRPRPCFLHRSLTS 143
GSRP P ++H S TS
Sbjct: 325 GSRPSPLYIHHSYTS 339
>NCU08764.1 NCU08764.1 predicted protein (41893 - 42890)
Length = 272
Score = 24.3 bits (51), Expect = 9.8
Identities = 10/26 (38%), Positives = 17/26 (64%), Gaps = 2/26 (7%)
Frame = -3
Query: 81 LDPLP--HHVDKLANSEVGRDKVPRP 10
+D LP H +D + E+ RD++P+P
Sbjct: 22 IDDLPGDHDIDWRSEDEIPRDELPQP 47
>NCU08756.1 NCU08756.1 predicted protein (18409 - 19931)
Length = 441
Score = 24.3 bits (51), Expect = 9.8
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = +2
Query: 182 ASCT*LTVARTLSALPNPCALPL*IN 259
A T L+V++ SALPNP A+ + N
Sbjct: 261 APATTLSVSQASSALPNPTAIAVSCN 286
Database: /phillip/Ncr/Ncr_P
Posted date: May 20, 2002 12:05 PM
Number of letters in database: 3,158,374
Number of sequences in database: 6531
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2074958
Number of Sequences: 6531
Number of extensions: 43101
Number of successful extensions: 139
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 139
length of query: 103
length of database: 3,158,374
effective HSP length: 42
effective length of query: 61
effective length of database: 2,884,072
effective search space: 175928392
effective search space used: 175928392
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)