BLASTX 2.1.3 [Apr-1-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query=
/phillip/projects/Xu/Fgr-S/seq_dir/blast_NcrP/Fgr-S_4_A04_T7.seq
         (280 letters)

Database: /phillip/Ncr/Ncr_P
           6531 sequences; 3,158,374 total letters

Searching..................................................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

NCU02126.1 NCU02126.1 hypothetical protein (18863 - 17415)             52  4e-08
NCU01924.1 NCU01924.1 predicted protein (238649 - 240120)              24  8.6
NCU09142.1 NCU09142.1 hypothetical protein (76040 - 73882)             24  8.6

>NCU02126.1 NCU02126.1 hypothetical protein (18863 - 17415)
          Length = 482

 Score = 52.0 bits (123), Expect = 4e-08
 Identities = 23/33 (69%), Positives = 28/33 (84%)
 Frame = -1

Query: 259 PTGRLLRDAKLFEIGAGTSEIRRMIIGRELFKE 161
           P  R++RDAKL+EIGAGTSE+RRM+IGR   KE
Sbjct: 443 PVSRIMRDAKLYEIGAGTSEVRRMVIGRVFNKE 475



>NCU01924.1 NCU01924.1 predicted protein (238649 - 240120)
          Length = 456

 Score = 24.3 bits (51), Expect = 8.6
 Identities = 11/20 (55%), Positives = 12/20 (60%)
 Frame = -2

Query: 63  MFDDVLSNPSHTFVPARAAA 4
           +F  V SNPS  FVP  A A
Sbjct: 255 IFQPVSSNPSTAFVPVAAVA 274



>NCU09142.1 NCU09142.1 hypothetical protein (76040 - 73882)
          Length = 697

 Score = 24.3 bits (51), Expect = 8.6
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = +2

Query: 242 QETASWVPRPRPR 280
           Q T  WVP+P+PR
Sbjct: 146 QTTDDWVPQPKPR 158



  Database: /phillip/Ncr/Ncr_P
    Posted date:  May 20, 2002 12:05 PM
  Number of letters in database: 3,158,374
  Number of sequences in database:  6531
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1623356
Number of Sequences: 6531
Number of extensions: 26570
Number of successful extensions: 58
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 58
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 58
length of query: 93
length of database: 3,158,374
effective HSP length: 39
effective length of query: 53
effective length of database: 2,903,665
effective search space: 153894245
effective search space used: 153894245
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)