BLASTX 2.1.3 [Apr-1-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query=
/phillip/projects/Xu/Fgr-S/seq_dir/blast_NcrP/Fgr-S_4_A05_T7.seq
(559 letters)
Database: /phillip/Ncr/Ncr_P
6531 sequences; 3,158,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
NCU08340.1 NCU08340.1 ADP-RIBOSYLATION FACTOR (30285 - 31093) 165 6e-42
NCU07173.1 NCU07173.1 hypothetical protein (80631 - 79917) 103 4e-23
NCU08989.1 NCU08989.1 hypothetical protein (52090 - 51401) 100 4e-22
NCU00218.1 NCU00218.1 hypothetical protein (70308 - 71163) 77 4e-15
NCU08618.1 NCU08618.1 hypothetical protein (38824 - 39606) 54 4e-08
NCU01642.1 NCU01642.1 hypothetical protein (12584 - 3605) 28 1.6
NCU07485.1 NCU07485.1 predicted protein (28076 - 27267) 28 2.1
NCU07277.1 NCU07277.1 hypothetical protein (78551 - 76284) 27 4.6
NCU09321.1 NCU09321.1 hypothetical protein (23158 - 25333) 27 4.6
NCU09319.1 NCU09319.1 hypothetical protein (16720 - 19237) 26 7.9
NCU01996.1 NCU01996.1 hypothetical protein (37277 - 35050) 26 7.9
>NCU08340.1 NCU08340.1 ADP-RIBOSYLATION FACTOR (30285 - 31093)
Length = 185
Score = 165 bits (418), Expect = 6e-42
Identities = 79/96 (82%), Positives = 89/96 (92%)
Frame = -3
Query: 530 QGLIFVVDSNDRERVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGL 351
QG+IFVVDSNDR+RVVEAR+EL RMLNEDELRDA+LLVFANKQDLPNAMNAAEITDKLGL
Sbjct: 89 QGIIFVVDSNDRDRVVEAREELQRMLNEDELRDALLLVFANKQDLPNAMNAAEITDKLGL 148
Query: 350 HSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANKA 243
SLRQR WYIQ+TCAT+G+GL+EGLDWLS + K+
Sbjct: 149 SSLRQRSWYIQATCATTGDGLFEGLDWLSTELKKKS 184
>NCU07173.1 NCU07173.1 hypothetical protein (80631 - 79917)
Length = 184
Score = 103 bits (256), Expect = 4e-23
Identities = 50/92 (54%), Positives = 67/92 (72%)
Frame = -3
Query: 530 QGLIFVVDSNDRERVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGL 351
QGLIFVVDS D R+ EAR ELHR++N+ E++D +LLVFANKQD+ AM E+T+KL L
Sbjct: 87 QGLIFVVDSADHNRIDEARVELHRIINDREMKDCLLLVFANKQDIAGAMTPQEVTEKLQL 146
Query: 350 HSLRQRHWYIQSTCATSGEGLYEGLDWLSNNI 255
+ L+ R + +Q T A GL EG +WLS+N+
Sbjct: 147 NKLKDRIYAVQPTIAIDKAGLQEGFNWLSDNM 178
>NCU08989.1 NCU08989.1 hypothetical protein (52090 - 51401)
Length = 183
Score = 99.8 bits (247), Expect = 4e-22
Identities = 50/90 (55%), Positives = 61/90 (67%)
Frame = -3
Query: 524 LIFVVDSNDRERVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHS 345
+IFVVDS D ER+ A DEL MLNE+EL+DA LLVFANKQD P A AA+I+ L L
Sbjct: 91 VIFVVDSTDMERLQTAADELAAMLNEEELKDAALLVFANKQDQPGAKGAADISQALRLGE 150
Query: 344 LRQRHWYIQSTCATSGEGLYEGLDWLSNNI 255
LR R+W I + A G G+ EG+DWL +
Sbjct: 151 LRDRNWSIMACSAVEGTGITEGMDWLVQTV 180
>NCU00218.1 NCU00218.1 hypothetical protein (70308 - 71163)
Length = 185
Score = 76.6 bits (187), Expect = 4e-15
Identities = 39/86 (45%), Positives = 53/86 (61%)
Frame = -3
Query: 524 LIFVVDSNDRERVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHS 345
LI+VVD+ DR R+ + +DELH +L E+ L A LLVFANK D+ M+ E+ + L L
Sbjct: 89 LIWVVDATDRLRIQDCKDELHGLLQEERLSGASLLVFANKTDVRGCMSEDELREALRLDE 148
Query: 344 LRQRHWYIQSTCATSGEGLYEGLDWL 267
+R W I A +GE L EGL W+
Sbjct: 149 IRTHKWNILRCSAMTGENLKEGLAWV 174
>NCU08618.1 NCU08618.1 hypothetical protein (38824 - 39606)
Length = 183
Score = 53.5 bits (127), Expect = 4e-08
Identities = 29/91 (31%), Positives = 44/91 (47%)
Frame = -3
Query: 539 RTPQGLIFVVDSNDRERVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDK 360
R ++F+VD D + +A+DELH ++ + L+ LLV NK DLP ++ E+ D
Sbjct: 87 RGVNAIVFIVDIADPRLLPQAKDELHSLMRNETLQGIPLLVLGNKSDLPERLSVDELIDA 146
Query: 359 LGLHSLRQRHWYIQSTCATSGEGLYEGLDWL 267
+ L S+ R A L L WL
Sbjct: 147 MDLKSIAGREVSCYGISAKEEMNLDAVLQWL 177
>NCU01642.1 NCU01642.1 hypothetical protein (12584 - 3605)
Length = 2667
Score = 28.1 bits (61), Expect = 1.6
Identities = 29/96 (30%), Positives = 39/96 (40%), Gaps = 4/96 (4%)
Frame = -3
Query: 467 LHRMLNEDELRDAV----LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATS 300
L R LN DELRD++ + V N LP + + GL
Sbjct: 2446 LARTLNLDELRDSLWSAGINVNPNSNGLPPFSSVSASVAAGGL----------------- 2488
Query: 299 GEGLYEGLDWLSNNIANKA*SISAGASMDLDKLDIR 192
G GL G D L ++A+ A A A+ D +DIR
Sbjct: 2489 GSGLGAGGDPLVGDVASDAVPSPAAAAADTSAIDIR 2524
>NCU07485.1 NCU07485.1 predicted protein (28076 - 27267)
Length = 269
Score = 27.7 bits (60), Expect = 2.1
Identities = 22/82 (26%), Positives = 33/82 (39%), Gaps = 14/82 (17%)
Frame = +3
Query: 165 FIIRKGSISPNIQLIQIHRSPCRDASSLVGNVVGQ--------------PVKALVQPLPR 302
F I G+ P++ + + C DAS N+ G V + VQPL
Sbjct: 144 FTIANGAPEPDLVEATTNSTLCTDASYFAFNLTGILDGSSGQYDGRNTCAVLSDVQPLVD 203
Query: 303 GSTCALDVPVSLAQGMQAKLVS 368
G CA+ V + A + A L +
Sbjct: 204 GDPCAVHVDSAAASSISAALTA 225
>NCU07277.1 NCU07277.1 hypothetical protein (78551 - 76284)
Length = 734
Score = 26.6 bits (57), Expect = 4.6
Identities = 17/56 (30%), Positives = 30/56 (53%), Gaps = 4/56 (7%)
Frame = -1
Query: 409 TSKIFLMP*MLLK-SLTSLACIPC---ASDTGTSRAHVLPLGRGCTRALTGCPTTL 254
TS + ++P + ++TS A +P A ++GT+ + TR +T CPTT+
Sbjct: 247 TSSVVVVPSSSIPVTITSAAPVPSTTSAQESGTTEWTTSTIVTTTTRTITQCPTTV 302
>NCU09321.1 NCU09321.1 hypothetical protein (23158 - 25333)
Length = 595
Score = 26.6 bits (57), Expect = 4.6
Identities = 10/28 (35%), Positives = 13/28 (45%)
Frame = -1
Query: 283 RALTGCPTTLPTRLEASRQGLLWIWISW 200
R + TLP R+ A + W WI W
Sbjct: 289 RQIVSTLITLPPRIRAICYAVFWSWIGW 316
>NCU09319.1 NCU09319.1 hypothetical protein (16720 - 19237)
Length = 805
Score = 25.8 bits (55), Expect = 7.9
Identities = 9/18 (50%), Positives = 11/18 (61%)
Frame = -3
Query: 380 AAEITDKLGLHSLRQRHW 327
A E+TDK+GLH W
Sbjct: 409 ATEVTDKIGLHDFEVPEW 426
>NCU01996.1 NCU01996.1 hypothetical protein (37277 - 35050)
Length = 705
Score = 25.8 bits (55), Expect = 7.9
Identities = 28/107 (26%), Positives = 41/107 (38%), Gaps = 1/107 (0%)
Frame = +3
Query: 189 SPNIQLIQIHRSPCRDASSLVGNVVGQPVKALVQPLPRGSTCALDVPVSLAQGMQAKLVS 368
+P I+ I + +D L V G + P+ G D + L K+ S
Sbjct: 26 TPIIKQIPLSSFEIKDVGDLSFGVFGYCTSSGCSPIEIG----YDTLLILTAAFSDKINS 81
Query: 369 DFSSIHGIRKILLVCKHQQHSITQLILIQHPV-KLISCLNNTLSVIA 506
DF R L ILI HPV LI+ +N L+++A
Sbjct: 82 DFDIPRATRSTL-----------SSILIVHPVAALITLINFVLAIVA 117
Database: /phillip/Ncr/Ncr_P
Posted date: May 20, 2002 12:05 PM
Number of letters in database: 3,158,374
Number of sequences in database: 6531
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3172372
Number of Sequences: 6531
Number of extensions: 63451
Number of successful extensions: 197
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 191
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 196
length of query: 186
length of database: 3,158,374
effective HSP length: 42
effective length of query: 143
effective length of database: 2,884,072
effective search space: 412422296
effective search space used: 412422296
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)