BLASTX 2.1.3 [Apr-1-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query=
/phillip/projects/Xu/Fgr-S/seq_dir/blast_NcrP/Fgr-S_4_A11_T7.seq
(341 letters)
Database: /phillip/Ncr/Ncr_P
6531 sequences; 3,158,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
NCU01047.1 NCU01047.1 hypothetical protein (136974 - 140135) 38 8e-04
NCU00684.1 NCU00684.1 hypothetical protein (379436 - 377702) 34 0.011
NCU07307.1 NCU07307.1 hypothetical protein (19173 - 12842) 28 1.0
NCU00876.1 NCU00876.1 hypothetical protein (61552 - 63705) 27 1.3
NCU06722.1 NCU06722.1 hypothetical protein (50688 - 52407) 27 2.3
NCU07405.1 NCU07405.1 predicted protein (3509 - 2061) 26 3.0
NCU06775.1 NCU06775.1 predicted protein (22500 - 15216) 25 5.1
NCU08487.1 NCU08487.1 hypothetical protein (2568 - 6698) 25 6.7
NCU06645.1 NCU06645.1 predicted protein (47508 - 46195) 25 8.7
NCU09632.1 NCU09632.1 hypothetical protein ( (AL355931) conserve... 25 8.7
NCU01089.1 NCU01089.1 predicted protein (254426 - 256632) 25 8.7
NCU07544.1 NCU07544.1 hypothetical protein (86078 - 88752) 25 8.7
>NCU01047.1 NCU01047.1 hypothetical protein (136974 - 140135)
Length = 1053
Score = 38.1 bits (87), Expect = 8e-04
Identities = 23/78 (29%), Positives = 40/78 (50%), Gaps = 11/78 (14%)
Frame = +1
Query: 43 RMVFVSCHLAA------HERKVEK-----RNSECRHISHSLFSKNDIHYAKSADITVWLG 189
R+VFV+CHLA+ +ER++ + + +S + S++ D T W G
Sbjct: 216 RLVFVNCHLASGIEGTYNERRIWDVGQILGRTRFKPVSFAGVSEDYEEKIGDEDFTFWFG 275
Query: 190 DLNYRLEGISSMPARKMI 243
DLN+RL+G+ R ++
Sbjct: 276 DLNFRLDGLPGDDIRHLL 293
>NCU00684.1 NCU00684.1 hypothetical protein (379436 - 377702)
Length = 558
Score = 34.3 bits (77), Expect = 0.011
Identities = 19/50 (38%), Positives = 26/50 (52%), Gaps = 5/50 (10%)
Frame = +1
Query: 187 GDLNYRLEG-----ISSMPARKMIEENRQSKLRDRDQLLQEAEKGQVFHG 321
GDLNYR++ +++ P+ N S RDQL QE E G+ HG
Sbjct: 306 GDLNYRIDTTTPPPLATYPSFDPSSGNHFSHFLPRDQLTQEREAGRTMHG 355
Score = 27.3 bits (59), Expect = 1.3
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = +1
Query: 46 MVFVSCHLAAHERKVEKRNSECRHISHSLFSKN 144
+ FV+ HLAA E ++KRN+ R I L N
Sbjct: 180 LTFVATHLAAMEWNLKKRNANWRSIVSGLTFAN 212
>NCU07307.1 NCU07307.1 hypothetical protein (19173 - 12842)
Length = 2092
Score = 27.7 bits (60), Expect = 1.0
Identities = 14/46 (30%), Positives = 24/46 (51%)
Frame = +1
Query: 190 DLNYRLEGISSMPARKMIEENRQSKLRDRDQLLQEAEKGQVFHGYL 327
D+N +L+ + + RK+I+ +K + LL EAE Q Y+
Sbjct: 1651 DINVKLQHVGMVAGRKIIKVEASNKETEEKVLLGEAEIEQPITAYI 1696
>NCU00876.1 NCU00876.1 hypothetical protein (61552 - 63705)
Length = 717
Score = 27.3 bits (59), Expect = 1.3
Identities = 13/38 (34%), Positives = 19/38 (49%)
Frame = +3
Query: 222 DASKENDRGESPE*AKRQRPAAARS*EGSSLPWVPRPR 335
DA +E D GE + A+R P+ R + + WV R
Sbjct: 590 DAEEEEDEGEEDKVARRVSPSTRRQKQRVHMLWVTHSR 627
>NCU06722.1 NCU06722.1 hypothetical protein (50688 - 52407)
Length = 491
Score = 26.6 bits (57), Expect = 2.3
Identities = 13/44 (29%), Positives = 21/44 (47%)
Frame = +1
Query: 202 RLEGISSMPARKMIEENRQSKLRDRDQLLQEAEKGQVFHGYLGR 333
RLE ++ + + RD + +L EKG+ F+ Y GR
Sbjct: 68 RLERVTGKKPHRFLRRGIVFSHRDLELILDRYEKGEPFYLYTGR 111
>NCU07405.1 NCU07405.1 predicted protein (3509 - 2061)
Length = 482
Score = 26.2 bits (56), Expect = 3.0
Identities = 13/46 (28%), Positives = 23/46 (49%)
Frame = +3
Query: 201 QIRRNKLDASKENDRGESPE*AKRQRPAAARS*EGSSLPWVPRPRP 338
Q+R + +E D + + ++Q+P A S + SS VP+ P
Sbjct: 57 QVREQQRQKQREQDAQQQQQQQQQQQPTPASSRQSSSSAPVPQSSP 102
>NCU06775.1 NCU06775.1 predicted protein (22500 - 15216)
Length = 1701
Score = 25.4 bits (54), Expect = 5.1
Identities = 14/43 (32%), Positives = 19/43 (43%)
Frame = -2
Query: 136 RTASAKYAGIQSSSSPPCVHGLQDGRTQTPSGSH*SLRTCPGG 8
+ A+ ++AG QS P GL G + H S T P G
Sbjct: 179 KEATDRFAGRQSRWKPKVRRGLSAGTIEGRESEHDSTTTHPSG 221
>NCU08487.1 NCU08487.1 hypothetical protein (2568 - 6698)
Length = 1331
Score = 25.0 bits (53), Expect = 6.7
Identities = 10/32 (31%), Positives = 16/32 (49%)
Frame = -2
Query: 172 CRQIWHNVCHSWRTASAKYAGIQSSSSPPCVH 77
C+ H H++ +A + +S S PPC H
Sbjct: 901 CQNHGHGHVHAYMPTAAIHLPTRSISPPPCSH 932
>NCU06645.1 NCU06645.1 predicted protein (47508 - 46195)
Length = 437
Score = 24.6 bits (52), Expect = 8.7
Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Frame = -2
Query: 157 HNVCHSWRTASAKYAGIQSS-SSPPCVHGLQDGRTQTPSGSH*SLRTCPG 11
H+ S + S+ +GIQ+S PP VH + S SH S + PG
Sbjct: 230 HHTTFSQQILSSPPSGIQTSLQPPPPVHYYHQDGSDIDSQSHLSHLSQPG 279
>NCU09632.1 NCU09632.1 hypothetical protein ( (AL355931) conserved
hypothetical protein [Neu
Length = 337
Score = 24.6 bits (52), Expect = 8.7
Identities = 16/64 (25%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
Frame = +1
Query: 118 ISHSLFSKNDI-HYAKSADITVWLGDLNYRLEGISSMPARKMIEENRQSKLRDRDQLLQE 294
+S + + + D+ AKSAD L + ++P+R + RQ + ++ ++E
Sbjct: 193 VSSTAYGEKDVGSLAKSADSGSSRAQLAQLFDESGAVPSRWGLARQRQDGVPSIEEAVEE 252
Query: 295 AEKG 306
A KG
Sbjct: 253 AVKG 256
>NCU01089.1 NCU01089.1 predicted protein (254426 - 256632)
Length = 589
Score = 24.6 bits (52), Expect = 8.7
Identities = 6/8 (75%), Positives = 7/8 (87%)
Frame = -2
Query: 160 WHNVCHSW 137
WH +CHSW
Sbjct: 440 WHQLCHSW 447
>NCU07544.1 NCU07544.1 hypothetical protein (86078 - 88752)
Length = 707
Score = 24.6 bits (52), Expect = 8.7
Identities = 15/29 (51%), Positives = 19/29 (64%)
Frame = +1
Query: 232 RKMIEENRQSKLRDRDQLLQEAEKGQVFH 318
R+M+E R SK+ D + LQEAEK FH
Sbjct: 52 RQMLEYKR-SKV-DLEHRLQEAEKSAAFH 78
Database: /phillip/Ncr/Ncr_P
Posted date: May 20, 2002 12:05 PM
Number of letters in database: 3,158,374
Number of sequences in database: 6531
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2194068
Number of Sequences: 6531
Number of extensions: 43171
Number of successful extensions: 152
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 151
length of query: 113
length of database: 3,158,374
effective HSP length: 42
effective length of query: 71
effective length of database: 2,884,072
effective search space: 204769112
effective search space used: 204769112
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)