BLASTX 2.1.3 [Apr-1-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query=
/phillip/projects/Xu/Fgr-S/seq_dir/blast_NcrP/Fgr-S_4_B08_T7.seq
         (317 letters)

Database: /phillip/Ncr/Ncr_P
           6531 sequences; 3,158,374 total letters

Searching..................................................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

NCU06948.1 NCU06948.1 hypothetical protein (10019 - 11398)             43  3e-05
NCU09871.1 NCU09871.1 hypothetical protein (8727 - 13145)              42  4e-05
NCU01241.1 NCU01241.1 hypothetical protein ( (AL513442) probable...    28  0.70
NCU08069.1 NCU08069.1 predicted protein (72311 - 74191)                26  3.5
NCU02215.1 NCU02215.1 predicted protein (11903 - 9543)                 25  5.9
NCU09184.1 NCU09184.1 hypothetical protein (94227 - 96706)             25  5.9
NCU08485.1 NCU08485.1 related to TRANSCRIPTIONAL REPRESSOR RCO-1...    25  7.7

>NCU06948.1 NCU06948.1 hypothetical protein (10019 - 11398)
          Length = 263

 Score = 42.7 bits (99), Expect = 3e-05
 Identities = 17/40 (42%), Positives = 29/40 (72%)
 Frame = -3

Query: 303 GQVSDVDIQRIAKELGENFTLQEIQEMVQEADQNGDGEID 184
           G +S  +++ + K LGE+ T  ++ EM++ AD+NGDG+ID
Sbjct: 102 GTISTEELRAVLKSLGEDMTDADVDEMIKLADKNGDGQID 141



 Score = 40.8 bits (94), Expect = 1e-04
 Identities = 18/51 (35%), Positives = 33/51 (64%)
 Frame = -3

Query: 303 GQVSDVDIQRIAKELGENFTLQEIQEMVQEADQNGDGEIDFGEFARMMKKT 151
           G ++  ++  + +ELG N +  E++++V EAD N DG I+F EF  +M ++
Sbjct: 29  GDITAEELGVVMRELGLNPSKAELEDLVNEADTNKDGVINFEEFLNLMSQS 79



>NCU09871.1 NCU09871.1 hypothetical protein (8727 - 13145)
          Length = 1051

 Score = 42.4 bits (98), Expect = 4e-05
 Identities = 17/48 (35%), Positives = 31/48 (64%)
 Frame = -3

Query: 303 GQVSDVDIQRIAKELGENFTLQEIQEMVQEADQNGDGEIDFGEFARMM 160
           G ++  D++R++K++G N    +I  M++E D +G G +D  EF R+M
Sbjct: 127 GMITQDDLRRVSKQVGNNIPDADITAMIEEFDASGKGGVDEDEFLRLM 174



>NCU01241.1 NCU01241.1 hypothetical protein ( (AL513442) probable
           mitochondrial carrier prot
          Length = 706

 Score = 28.1 bits (61), Expect = 0.70
 Identities = 12/31 (38%), Positives = 22/31 (70%)
 Frame = -3

Query: 240 QEIQEMVQEADQNGDGEIDFGEFARMMKKTS 148
           + I++  Q  D++GDG I+ G+F R++ +TS
Sbjct: 180 ERIRQAFQLFDKDGDGFIEPGDFERIIMETS 210



>NCU08069.1 NCU08069.1 predicted protein (72311 - 74191)
          Length = 577

 Score = 25.8 bits (55), Expect = 3.5
 Identities = 15/49 (30%), Positives = 22/49 (44%), Gaps = 5/49 (10%)
 Frame = +3

Query: 168 WQTRQNLSHHHHFDLPL-----EPFLGSLGE*SFHPTPWQYAEYQHLKP 299
           +Q   N  HH HF +P       P + S+   + HP+P     +Q L P
Sbjct: 254 YQYLPNPHHHQHFSIPFAPPARPPHVRSIPSYAHHPSP---PHHQFLHP 299



>NCU02215.1 NCU02215.1 predicted protein (11903 - 9543)
          Length = 786

 Score = 25.0 bits (53), Expect = 5.9
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = -3

Query: 51  FPPSDPVELCVPRPRP 4
           FPP+ P+ +  PRP P
Sbjct: 216 FPPTSPLNIKTPRPMP 231



>NCU09184.1 NCU09184.1 hypothetical protein (94227 - 96706)
          Length = 674

 Score = 25.0 bits (53), Expect = 5.9
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = +1

Query: 4  WSRPRYTEFNRITRRKQNSKYIRQT 78
          WS P Y E NRI   +     +R+T
Sbjct: 18 WSMPGYHELNRIDMHQNRPSELRRT 42



>NCU08485.1 NCU08485.1 related to TRANSCRIPTIONAL REPRESSOR RCO-1
           [MIPS] (9070 - 10320)
          Length = 396

 Score = 24.6 bits (52), Expect = 7.7
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = -2

Query: 166 DDEEDQLWLLGGDGICECL 110
           D +E  LW   GDG  +CL
Sbjct: 244 DGDEADLWSASGDGSAKCL 262



  Database: /phillip/Ncr/Ncr_P
    Posted date:  May 20, 2002 12:05 PM
  Number of letters in database: 3,158,374
  Number of sequences in database:  6531
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1846864
Number of Sequences: 6531
Number of extensions: 34078
Number of successful extensions: 116
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 116
length of query: 105
length of database: 3,158,374
effective HSP length: 42
effective length of query: 63
effective length of database: 2,884,072
effective search space: 181696536
effective search space used: 181696536
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)