BLASTX 2.1.3 [Apr-1-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query=
/phillip/projects/Xu/Fgr-S/seq_dir/blast_NcrP/Fgr-S_4_B11_T7.seq
(423 letters)
Database: /phillip/Ncr/Ncr_P
6531 sequences; 3,158,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
NCU08332.1 NCU08332.1 hypothetical protein ( probable V-ATPase, ... 32 0.075
NCU06973.1 NCU06973.1 hypothetical protein (62387 - 65570) 30 0.29
NCU06731.1 NCU06731.1 predicted protein (15912 - 13475) 26 4.1
NCU07307.1 NCU07307.1 hypothetical protein (19173 - 12842) 26 4.1
NCU08279.1 NCU08279.1 predicted protein (46271 - 49405) 25 7.0
>NCU08332.1 NCU08332.1 hypothetical protein ( probable V-ATPase, 20K
chain [imported] - Neur
Length = 176
Score = 32.0 bits (71), Expect = 0.075
Identities = 18/73 (24%), Positives = 39/73 (52%), Gaps = 1/73 (1%)
Frame = -1
Query: 393 QDYQLIDITDDGYVSLLTESGNTKDDLKLPTDDVLLGQIKTGFADGKDLI-LSVMSAMGE 217
+ Y+++D+ DG + +TE+G+ K +L + L +++ F G+ + + V+S G
Sbjct: 104 KQYRVLDM-QDGSIVAMTETGDVKQNLPVIDQSSLWNRLQKAFESGRGSVRVLVVSDHGR 162
Query: 216 EQICAVKEIGGGK 178
E +K + G +
Sbjct: 163 EMAVDMKVVHGSR 175
>NCU06973.1 NCU06973.1 hypothetical protein (62387 - 65570)
Length = 767
Score = 30.0 bits (66), Expect = 0.29
Identities = 19/61 (31%), Positives = 33/61 (53%), Gaps = 2/61 (3%)
Frame = -1
Query: 384 QLIDITDDGYVSLLTESGNTKDDLKLP--TDDVLLGQIKTGFADGKDLILSVMSAMGEEQ 211
+L +I +D + + +GN KDD+ LP +DD+L +I G D ++ +S E+
Sbjct: 198 ELGEIIEDAAIVMGIRAGNNKDDMSLPMFSDDILKVEISGPDVTG-DAVVPCLSDPATER 256
Query: 210 I 208
I
Sbjct: 257 I 257
>NCU06731.1 NCU06731.1 predicted protein (15912 - 13475)
Length = 720
Score = 26.2 bits (56), Expect = 4.1
Identities = 13/29 (44%), Positives = 16/29 (54%)
Frame = +2
Query: 140 PSIAGRQPRTAAYLPPPISFTAQICSSPM 226
P A TA+ LP PIS + + SSPM
Sbjct: 261 PRSAATSAGTASTLPTPISASTDVRSSPM 289
>NCU07307.1 NCU07307.1 hypothetical protein (19173 - 12842)
Length = 2092
Score = 26.2 bits (56), Expect = 4.1
Identities = 15/52 (28%), Positives = 26/52 (49%), Gaps = 3/52 (5%)
Frame = -1
Query: 423 GRPGRSHVDRQDYQLIDITD---DGYVSLLTESGNTKDDLKLPTDDVLLGQI 277
G H + D + DI D +G+++LLT D+ K+PT + G++
Sbjct: 1070 GPMAAKHATKVDEPIKDILDGIHNGHIALLTRDMYGGDESKIPTIEYFGGKL 1121
>NCU08279.1 NCU08279.1 predicted protein (46271 - 49405)
Length = 1044
Score = 25.4 bits (54), Expect = 7.0
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = +3
Query: 354 HIHHQLCQSADNLGG 398
HIHH+ + ADN GG
Sbjct: 169 HIHHRFSRKADNEGG 183
Database: /phillip/Ncr/Ncr_P
Posted date: May 20, 2002 12:05 PM
Number of letters in database: 3,158,374
Number of sequences in database: 6531
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2781160
Number of Sequences: 6531
Number of extensions: 64419
Number of successful extensions: 146
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 146
length of query: 141
length of database: 3,158,374
effective HSP length: 42
effective length of query: 98
effective length of database: 2,884,072
effective search space: 282639056
effective search space used: 282639056
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)