BLASTX 2.1.3 [Apr-1-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query=
/phillip/projects/Xu/Fgr-S/seq_dir/blast_NcrP/Fgr-S_4_D01_T7.seq
(337 letters)
Database: /phillip/Ncr/Ncr_P
6531 sequences; 3,158,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
NCU01154.1 NCU01154.1 hypothetical protein (844 - 2467) 32 0.041
NCU09997.1 NCU09997.1 predicted protein (2593 - 3208) 28 0.59
NCU07308.1 NCU07308.1 hypothetical protein (23233 - 28953) 28 0.77
NCU09482.1 NCU09482.1 predicted protein (17414 - 13175) 28 1.00
NCU02678.1 NCU02678.1 predicted protein (119776 - 118574) 27 1.7
NCU08271.1 NCU08271.1 hypothetical protein (22608 - 20937) 27 1.7
NCU09051.1 NCU09051.1 hypothetical protein (23033 - 18061) 26 2.9
NCU01355.1 NCU01355.1 hypothetical protein ( hypothetical protei... 26 2.9
NCU07074.1 NCU07074.1 predicted protein (58144 - 60744) 26 3.8
NCU07418.1 NCU07418.1 hypothetical protein (20789 - 18444) 26 3.8
NCU02354.1 NCU02354.1 hypothetical protein (15166 - 19998) 25 5.0
NCU08512.1 NCU08512.1 hypothetical protein (5069 - 2626) 25 5.0
NCU01665.1 NCU01665.1 hypothetical protein (18087 - 15994) 25 5.0
NCU00728.1 NCU00728.1 hypothetical protein (9756 - 7821) 25 5.0
NCU01356.1 NCU01356.1 hypothetical protein (5251 - 3626) 25 5.0
NCU08510.1 NCU08510.1 hypothetical protein (79346 - 77415) 25 6.5
NCU06453.1 NCU06453.1 predicted protein (135365 - 138653) 25 6.5
NCU01607.1 NCU01607.1 hypothetical protein (46552 - 45250) 25 6.5
NCU06435.1 NCU06435.1 hypothetical protein (83393 - 80887) 25 6.5
NCU07813.1 NCU07813.1 predicted protein (6843 - 8360) 25 6.5
NCU09459.1 NCU09459.1 predicted protein (22053 - 19989) 25 6.5
NCU07605.1 NCU07605.1 hypothetical protein (81057 - 86134) 25 8.5
NCU09237.1 NCU09237.1 hypothetical protein (25100 - 23579) 25 8.5
NCU09155.1 NCU09155.1 hypothetical protein (32283 - 34043) 25 8.5
>NCU01154.1 NCU01154.1 hypothetical protein (844 - 2467)
Length = 445
Score = 32.3 bits (72), Expect = 0.041
Identities = 15/39 (38%), Positives = 23/39 (58%)
Frame = +1
Query: 16 RYPSTFAPYLSANW*TPFPLAALPDASTPSLNTTPPPGP 132
++PS A + S+ + P PL A D + P L++ PPP P
Sbjct: 119 KHPSPRALHPSSGFPRPDPLPAFSDPARPQLSSRPPPPP 157
>NCU09997.1 NCU09997.1 predicted protein (2593 - 3208)
Length = 127
Score = 28.5 bits (62), Expect = 0.59
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = -3
Query: 206 RPSARPSLLIVASKKAKKVQTAQPYGPGGGV 114
RP A P + + A + AK + GPGGG+
Sbjct: 21 RPGAAPGVGVRAGRGAKAIADLASQGPGGGI 51
>NCU07308.1 NCU07308.1 hypothetical protein (23233 - 28953)
Length = 1864
Score = 28.1 bits (61), Expect = 0.77
Identities = 15/46 (32%), Positives = 26/46 (55%), Gaps = 1/46 (2%)
Frame = +1
Query: 157 FAFLLATMSS-DGLADGRTPRSFARPNSGEGDGFSRTKDAMTEADM 291
FA + AT ++ D A GRTP+ +RP + +GF ++ + + M
Sbjct: 1312 FANMKATSNAVDEFAHGRTPKEMSRPTTTTRNGFMESQGSGVQVIM 1357
>NCU09482.1 NCU09482.1 predicted protein (17414 - 13175)
Length = 1395
Score = 27.7 bits (60), Expect = 1.00
Identities = 22/77 (28%), Positives = 30/77 (38%)
Frame = +2
Query: 59 KHPSPWPPFRTHRRLP*TPLHHQARRVGQSGPSSPSCWLL*AAMASPMVAHPGASLVLTV 238
+HPSP+PP+ P H Q S P SPS P + H L
Sbjct: 633 QHPSPYPPYH-------LPQHLQQGAAVSSPPQSPSA-------IPPRLTHG-----LAA 673
Query: 239 EREMVSAEPKTP*QRQT 289
++ S P P Q+Q+
Sbjct: 674 PQQQRSPPPLQPQQQQS 690
>NCU02678.1 NCU02678.1 predicted protein (119776 - 118574)
Length = 377
Score = 26.9 bits (58), Expect = 1.7
Identities = 27/83 (32%), Positives = 34/83 (40%), Gaps = 9/83 (10%)
Frame = +1
Query: 64 PFPLAALPDASTPSLNTTPPPGP-------*GWAVWTFFAFLLATMSSDGLADGRT-PRS 219
P P A P ++PS T PPP P G A+ F+ G +GRT P
Sbjct: 92 PSPSTA-PSFTSPSSATVPPPPPPPTAAKSKGLAMMAKMGFVPGNALGAGATEGRTEPIK 150
Query: 220 FARPNSGEGDGF-SRTKDAMTEA 285
+ + EG G S K M EA
Sbjct: 151 ISIKDGREGIGLESDRKRKMREA 173
>NCU08271.1 NCU08271.1 hypothetical protein (22608 - 20937)
Length = 478
Score = 26.9 bits (58), Expect = 1.7
Identities = 21/66 (31%), Positives = 28/66 (41%), Gaps = 3/66 (4%)
Frame = -3
Query: 209 VRPSARPSLLIVASKKAKKVQTAQPYGPGGGVVFKEGVD---ASGRAAKGKGVYQFADKY 39
V + R ++A+ V T +GPG G + +GV G A G G A Y
Sbjct: 329 VEQNRRMQQALLAAAATPGVFTPGVFGPGTGGFYPDGVTGGLVGGGGASGAGA--GAGGY 386
Query: 38 GANVDG 21
GA V G
Sbjct: 387 GAGVGG 392
>NCU09051.1 NCU09051.1 hypothetical protein (23033 - 18061)
Length = 1136
Score = 26.2 bits (56), Expect = 2.9
Identities = 12/22 (54%), Positives = 13/22 (58%)
Frame = +3
Query: 54 LVNTLPLGRPSGRIDAFLEHHS 119
L N +PL PSGRI HHS
Sbjct: 867 LDNAMPLALPSGRILFAFRHHS 888
>NCU01355.1 NCU01355.1 hypothetical protein ( hypothetical protein
15E6.200 [imported] - Neu
Length = 496
Score = 26.2 bits (56), Expect = 2.9
Identities = 14/37 (37%), Positives = 18/37 (47%)
Frame = +1
Query: 22 PSTFAPYLSANW*TPFPLAALPDASTPSLNTTPPPGP 132
PS AP +S + P A+ +ST L PPP P
Sbjct: 199 PSYSAPEISIPFHNPASSTAVSVSSTRHLTAAPPPPP 235
>NCU07074.1 NCU07074.1 predicted protein (58144 - 60744)
Length = 866
Score = 25.8 bits (55), Expect = 3.8
Identities = 14/38 (36%), Positives = 20/38 (51%)
Frame = +1
Query: 19 YPSTFAPYLSANW*TPFPLAALPDASTPSLNTTPPPGP 132
Y S+ +P LS + +P P S+PS +TT P P
Sbjct: 616 YSSSISP-LSTSSNSPSPTCTSSPTSSPSASTTTSPSP 652
>NCU07418.1 NCU07418.1 hypothetical protein (20789 - 18444)
Length = 747
Score = 25.8 bits (55), Expect = 3.8
Identities = 12/24 (50%), Positives = 15/24 (62%), Gaps = 1/24 (4%)
Frame = +1
Query: 61 TPFPLAALP-DASTPSLNTTPPPG 129
TP L P A+TP++ TPPPG
Sbjct: 367 TPEQLHVFPASANTPAVGITPPPG 390
>NCU02354.1 NCU02354.1 hypothetical protein (15166 - 19998)
Length = 1254
Score = 25.4 bits (54), Expect = 5.0
Identities = 13/37 (35%), Positives = 16/37 (43%)
Frame = +2
Query: 56 GKHPSPWPPFRTHRRLP*TPLHHQARRVGQSGPSSPS 166
G H P P H+ +P P+H Q G P PS
Sbjct: 825 GLHQQPLGPQHQHQPMPGMPMHVQPHHPGMP-PMQPS 860
>NCU08512.1 NCU08512.1 hypothetical protein (5069 - 2626)
Length = 787
Score = 25.4 bits (54), Expect = 5.0
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = +1
Query: 70 PLAALPDASTPSLNTTPPPGP 132
P A P+A +P+L + PPP P
Sbjct: 588 PNHAAPNALSPALGSMPPPPP 608
>NCU01665.1 NCU01665.1 hypothetical protein (18087 - 15994)
Length = 523
Score = 25.4 bits (54), Expect = 5.0
Identities = 14/35 (40%), Positives = 16/35 (45%)
Frame = +1
Query: 34 APYLSANW*TPFPLAALPDASTPSLNTTPPPGP*G 138
AP SA+ P P A P P + PPP P G
Sbjct: 471 APGASASPPPPPPTEAAPPPPPPPSSAAPPPPPPG 505
>NCU00728.1 NCU00728.1 hypothetical protein (9756 - 7821)
Length = 501
Score = 25.4 bits (54), Expect = 5.0
Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Frame = +1
Query: 151 TFFAFLLATMSSD-GLADGRTPRSFARPNSGEGDGFSRTKDA 273
T+ + L + D G + G TPR +R N+ +G GF + A
Sbjct: 248 TYVRYSLRAVDFDSGTSRGPTPRLVSRSNAEKGLGFGNAQGA 289
>NCU01356.1 NCU01356.1 hypothetical protein (5251 - 3626)
Length = 541
Score = 25.4 bits (54), Expect = 5.0
Identities = 14/38 (36%), Positives = 21/38 (54%)
Frame = +1
Query: 19 YPSTFAPYLSANW*TPFPLAALPDASTPSLNTTPPPGP 132
YP +A S++ PL+ P AS+ SL++ PP P
Sbjct: 316 YPQLYADDESSD----SPLSPSPSASSSSLSSAPPQTP 349
>NCU08510.1 NCU08510.1 hypothetical protein (79346 - 77415)
Length = 566
Score = 25.0 bits (53), Expect = 6.5
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = +1
Query: 196 ADGRTPRSFARPNSGEGDGFSRTKDAMTEADMF 294
ADG P + A S +G+G RT++ + D +
Sbjct: 222 ADGSVPAAAAATTSAKGEGEQRTEEDEEDDDEY 254
>NCU06453.1 NCU06453.1 predicted protein (135365 - 138653)
Length = 1060
Score = 25.0 bits (53), Expect = 6.5
Identities = 15/39 (38%), Positives = 17/39 (43%)
Frame = +1
Query: 10 RPRYPSTFAPYLSANW*TPFPLAALPDASTPSLNTTPPP 126
+P PST AP P+A P S P L T P P
Sbjct: 437 QPPQPSTLAPIRG-------PMAPPPIPSPPPLETKPAP 468
>NCU01607.1 NCU01607.1 hypothetical protein (46552 - 45250)
Length = 412
Score = 25.0 bits (53), Expect = 6.5
Identities = 12/34 (35%), Positives = 15/34 (43%), Gaps = 1/34 (2%)
Frame = +2
Query: 38 HTCRQTGKHPSP-WPPFRTHRRLP*TPLHHQARR 136
H H SP WPP +H+ +P HH R
Sbjct: 340 HPAEAEQAHLSPVWPPSASHQSRSGSPSHHAYSR 373
>NCU06435.1 NCU06435.1 hypothetical protein (83393 - 80887)
Length = 777
Score = 25.0 bits (53), Expect = 6.5
Identities = 13/33 (39%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
Frame = -2
Query: 309 LVSEHKHVCLC-HGVFGSAETISLSTVRTSEAP 214
LV E + C ET+ LST+R EAP
Sbjct: 354 LVGESSYCLTCLEAAISFLETVDLSTLRADEAP 386
>NCU07813.1 NCU07813.1 predicted protein (6843 - 8360)
Length = 477
Score = 25.0 bits (53), Expect = 6.5
Identities = 12/42 (28%), Positives = 16/42 (37%)
Frame = +2
Query: 41 TCRQTGKHPSPWPPFRTHRRLP*TPLHHQARRVGQSGPSSPS 166
T R P P PP P TP HH + ++P+
Sbjct: 25 TTRPPPSSPLPTPPHSNITSPPTTPQHHNNTTTNNNNTTTPT 66
>NCU09459.1 NCU09459.1 predicted protein (22053 - 19989)
Length = 647
Score = 25.0 bits (53), Expect = 6.5
Identities = 21/91 (23%), Positives = 39/91 (42%), Gaps = 3/91 (3%)
Frame = +1
Query: 22 PSTFAPYLSANW*TPFPLAALPDAST---PSLNTTPPPGP*GWAVWTFFAFLLATMSSDG 192
P+ F P L +N + F ++++ + N+ PPPGP + V + + S+ G
Sbjct: 521 PAGFPPSLPSNLGSNFSSNLTSNSTSNHSTNSNSNPPPGPIPFGVRSESSLNAGLGSAQG 580
Query: 193 LADGRTPRSFARPNSGEGDGFSRTKDAMTEA 285
+G + G G+G+ + T A
Sbjct: 581 HGNGHGYGHGSDTAVGNGNGYVKRTRNFTPA 611
>NCU07605.1 NCU07605.1 hypothetical protein (81057 - 86134)
Length = 1282
Score = 24.6 bits (52), Expect = 8.5
Identities = 12/31 (38%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
Frame = +2
Query: 50 QTGKHPS--PWPPFRTHRRLP*TPLHHQARR 136
QT +H + P R+ +P +P HHQ RR
Sbjct: 385 QTSRHVAREAVPRSRSRHAIPRSPQHHQGRR 415
>NCU09237.1 NCU09237.1 hypothetical protein (25100 - 23579)
Length = 489
Score = 24.6 bits (52), Expect = 8.5
Identities = 18/70 (25%), Positives = 29/70 (40%)
Frame = +2
Query: 8 RGRGTHQRLLHTCRQTGKHPSPWPPFRTHRRLP*TPLHHQARRVGQSGPSSPSCWLL*AA 187
R RG R H + ++P+P+ + P P+H+ A G G ++P
Sbjct: 329 RNRGPDPRSHHGMPPS-QYPAPYGAPHPAQPNPAVPMHYGAHAAGGYGAAAPH------- 380
Query: 188 MASPMVAHPG 217
+P V H G
Sbjct: 381 -VAPHVGHAG 389
>NCU09155.1 NCU09155.1 hypothetical protein (32283 - 34043)
Length = 518
Score = 24.6 bits (52), Expect = 8.5
Identities = 15/39 (38%), Positives = 19/39 (48%)
Frame = -3
Query: 131 GPGGGVVFKEGVDASGRAAKGKGVYQFADKYGANVDGYL 15
G G G + +D+SGR+ G V A GA V G L
Sbjct: 479 GSGSGSMSATALDSSGRSMAGDVVLSAAVAVGAAVLGSL 517
Database: /phillip/Ncr/Ncr_P
Posted date: May 20, 2002 12:05 PM
Number of letters in database: 3,158,374
Number of sequences in database: 6531
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2696548
Number of Sequences: 6531
Number of extensions: 71212
Number of successful extensions: 349
Number of sequences better than 10.0: 48
Number of HSP's better than 10.0 without gapping: 325
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 348
length of query: 112
length of database: 3,158,374
effective HSP length: 42
effective length of query: 69
effective length of database: 2,884,072
effective search space: 199000968
effective search space used: 199000968
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)