BLASTX 2.1.3 [Apr-1-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query=
/phillip/projects/Xu/Fgr-S/seq_dir/blast_NcrP/Fgr-S_4_D05_T7.seq
(383 letters)
Database: /phillip/Ncr/Ncr_P
6531 sequences; 3,158,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
NCU07941.1 NCU07941.1 hypothetical protein (133821 - 131969) 127 1e-30
NCU08411.1 NCU08411.1 hypothetical protein (39691 - 38019) 125 6e-30
NCU07419.1 NCU07419.1 hypothetical protein (25129 - 23274) 32 0.065
NCU08600.1 NCU08600.1 predicted protein (14412 - 19583) 28 0.94
NCU00679.1 NCU00679.1 hypothetical protein (361425 - 363988) 25 8.0
>NCU07941.1 NCU07941.1 hypothetical protein (133821 - 131969)
Length = 482
Score = 127 bits (318), Expect = 1e-30
Identities = 62/116 (53%), Positives = 82/116 (70%)
Frame = +3
Query: 18 QVESQLKLVIRPMYSNPPLHGASIVATILKDSAMFDEWTLELKAMADRIISMREQLFNAL 197
+V SQL L+ R SNPP++GA + + +L D A+F EW L+ M+ RII MR+ L L
Sbjct: 352 RVASQLTLLQRSEISNPPIYGAKVASIVLNDPALFAEWKENLRTMSGRIIDMRKALRAKL 411
Query: 198 KIRETPGDWSHIIKQIGMFTFTGLNSDQVAFMRQEYHIYMTSDGRISMAGLSSRTV 365
+ TPG W+HI QIGMF+FTGLN QVA +R+E+HIYMT +GRISMAGL+ + V
Sbjct: 412 EELGTPGPWNHITDQIGMFSFTGLNEKQVAKLREEFHIYMTKNGRISMAGLNKKNV 467
>NCU08411.1 NCU08411.1 hypothetical protein (39691 - 38019)
Length = 429
Score = 125 bits (313), Expect = 6e-30
Identities = 58/118 (49%), Positives = 83/118 (70%)
Frame = +3
Query: 18 QVESQLKLVIRPMYSNPPLHGASIVATILKDSAMFDEWTLELKAMADRIISMREQLFNAL 197
+V+SQ+K+++RP+YSNPP+HGA I A IL ++++W E+K MADRII MR L L
Sbjct: 302 RVDSQVKILVRPLYSNPPIHGARIAAEILNTPELYEQWLTEVKEMADRIIKMRALLKENL 361
Query: 198 KIRETPGDWSHIIKQIGMFTFTGLNSDQVAFMRQEYHIYMTSDGRISMAGLSSRTVPR 371
+ + DWSHI QIGMF +TGL +Q+ + +E+ +Y T DGRIS+AG++S V R
Sbjct: 362 EKLGSKHDWSHITSQIGMFAYTGLTPEQMEKLAKEHSVYATKDGRISVAGITSENVGR 419
>NCU07419.1 NCU07419.1 hypothetical protein (25129 - 23274)
Length = 511
Score = 32.0 bits (71), Expect = 0.065
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = +3
Query: 126 EWTLELKAMADRIISMREQLFNALKIRETPGDWSHIIKQI 245
EW LE A A R+ RE + +A +I P W H++ I
Sbjct: 359 EWLLEFHAEARRLPECREGICHAGEILHVPSGWWHLVVNI 398
>NCU08600.1 NCU08600.1 predicted protein (14412 - 19583)
Length = 1276
Score = 28.1 bits (61), Expect = 0.94
Identities = 30/113 (26%), Positives = 41/113 (35%), Gaps = 8/113 (7%)
Frame = -1
Query: 362 SPGAQTSHADPPI-------RCHVNVIFLPHKGYLITVEPSESKHPNLLNDVGPISRCFS 204
+P + S A PP R N F P V+ + P L P +R S
Sbjct: 997 TPSSSRSAAQPPRPSSKLDNRPRWNATFSPSD-----VDTGHNFKPLSLTTPSPYARSTS 1051
Query: 203 DF-QRIKKLLPHANYPISHGLQLQSPFVEHRTVLKYGSHDRSTMKRRVRIHRP 48
Q LP P++HG +QSP +K + S + R RI P
Sbjct: 1052 SLGQSSTSKLPQTRSPLTHGSDVQSP------TIKRSNATASKLSFRERISSP 1098
>NCU00679.1 NCU00679.1 hypothetical protein (361425 - 363988)
Length = 690
Score = 25.0 bits (53), Expect = 8.0
Identities = 10/29 (34%), Positives = 14/29 (47%)
Frame = +3
Query: 186 FNALKIRETPGDWSHIIKQIGMFTFTGLN 272
F + +RE P DW H I G T ++
Sbjct: 304 FRSRTLREKPDDWEHHIYSFGSIEETAVS 332
Database: /phillip/Ncr/Ncr_P
Posted date: May 20, 2002 12:05 PM
Number of letters in database: 3,158,374
Number of sequences in database: 6531
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2478673
Number of Sequences: 6531
Number of extensions: 49651
Number of successful extensions: 121
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 121
length of query: 127
length of database: 3,158,374
effective HSP length: 42
effective length of query: 85
effective length of database: 2,884,072
effective search space: 245146120
effective search space used: 245146120
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)