BLASTX 2.1.3 [Apr-1-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query=
/phillip/projects/Xu/Fgr-S/seq_dir/blast_NcrP/Fgr-S_4_D09_T7.seq
(419 letters)
Database: /phillip/Ncr/Ncr_P
6531 sequences; 3,158,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
NCU00414.1 NCU00414.1 hypothetical protein (181805 - 183441) 78 9e-16
NCU08007.1 NCU08007.1 hypothetical protein (131232 - 129751) 42 6e-05
NCU01480.1 NCU01480.1 hypothetical protein (70435 - 71454) 28 1.1
NCU07863.1 NCU07863.1 hypothetical protein (79058 - 85856) 27 3.1
NCU02558.1 NCU02558.1 hypothetical protein (186941 - 188951) 27 3.1
NCU07480.1 NCU07480.1 predicted protein (1269 - 3836) 27 3.1
NCU09069.1 NCU09069.1 hypothetical protein (1189 - 21) 26 4.1
NCU09137.1 NCU09137.1 predicted protein (63725 - 62007) 26 4.1
NCU08173.1 NCU08173.1 predicted protein (61029 - 59470) 26 5.3
NCU01418.1 NCU01418.1 hypothetical protein (9629 - 8885) 26 5.3
NCU07849.1 NCU07849.1 hypothetical protein (34134 - 31515) 25 7.0
NCU06404.1 NCU06404.1 RAS-RELATED PROTEIN RAB1BV (98059 - 99017) 25 7.0
NCU09482.1 NCU09482.1 predicted protein (17414 - 13175) 25 7.0
NCU08496.1 NCU08496.1 hypothetical protein (25054 - 28983) 25 9.1
NCU01786.1 NCU01786.1 hypothetical protein (3284 - 4825) 25 9.1
NCU02112.1 NCU02112.1 hypothetical protein (49915 - 44489) 25 9.1
>NCU00414.1 NCU00414.1 hypothetical protein (181805 - 183441)
Length = 479
Score = 78.2 bits (191), Expect = 9e-16
Identities = 39/82 (47%), Positives = 55/82 (66%), Gaps = 2/82 (2%)
Frame = -2
Query: 406 RAGVITQGADPVVVAEDGK--VKTFPVILLPKEKLVDTNGAGDAFVGGFLSQLVQGKSIE 233
R +ITQG +P +VA G+ VK +PV + K+ DTNGAGDAF GGF + +V+GKSIE
Sbjct: 388 RVAIITQGTEPTIVAIQGEDEVKEYPVHSIDPAKINDTNGAGDAFAGGFAAGVVEGKSIE 447
Query: 232 DCVKAGCYAANVIIQQSGCTYP 167
+ + G + A + IQ+ G +YP
Sbjct: 448 ESIHMGQWLAKLSIQELGPSYP 469
>NCU08007.1 NCU08007.1 hypothetical protein (131232 - 129751)
Length = 493
Score = 42.4 bits (98), Expect = 6e-05
Identities = 22/64 (34%), Positives = 32/64 (49%)
Frame = -2
Query: 370 VVAEDGKVKTFPVILLPKEKLVDTNGAGDAFVGGFLSQLVQGKSIEDCVKAGCYAANVII 191
+ + G + P K+VD G G+ F+GG L +GKSIE+ G AA+ I
Sbjct: 397 IEVDSGIERWLPAYHTDATKVVDPTGGGNTFLGGLAVALARGKSIEEACAWGSVAASFAI 456
Query: 190 QQSG 179
+Q G
Sbjct: 457 EQVG 460
>NCU01480.1 NCU01480.1 hypothetical protein (70435 - 71454)
Length = 339
Score = 28.1 bits (61), Expect = 1.1
Identities = 13/38 (34%), Positives = 18/38 (47%)
Frame = +2
Query: 5 GRGRGTTDIHGLKI*AGSDGKPQNNTGRTSRTIKWLSV 118
G G G +H G+D + +N RT RT KW +
Sbjct: 14 GAGAGAGGLHINHTTTGADREAENRHHRTPRTAKWYKI 51
>NCU07863.1 NCU07863.1 hypothetical protein (79058 - 85856)
Length = 2189
Score = 26.6 bits (57), Expect = 3.1
Identities = 18/46 (39%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
Frame = +1
Query: 265 GSRQQTHHQRHWCQQASPWAIGSQGMFLPSHPQPQLLD-QHPE*SH 399
G+ QQ H Q QQ A +Q HP PQL Q P+ SH
Sbjct: 1918 GNGQQLHQQHQHQQQQPQQAQQTQQQRQQVHPAPQLPQAQPPQHSH 1963
>NCU02558.1 NCU02558.1 hypothetical protein (186941 - 188951)
Length = 626
Score = 26.6 bits (57), Expect = 3.1
Identities = 11/43 (25%), Positives = 23/43 (52%)
Frame = +1
Query: 253 PTERGSRQQTHHQRHWCQQASPWAIGSQGMFLPSHPQPQLLDQ 381
P + Q Q+H QQ P ++ +Q + P+ P+P+ +++
Sbjct: 303 PPQPAQPPQQQQQQHRHQQQQPQSMPNQNLQPPAPPKPESMER 345
>NCU07480.1 NCU07480.1 predicted protein (1269 - 3836)
Length = 447
Score = 26.6 bits (57), Expect = 3.1
Identities = 12/27 (44%), Positives = 15/27 (55%), Gaps = 3/27 (11%)
Frame = +1
Query: 256 TERGSRQQTHHQRHWCQQAS---PWAI 327
T R QQ H R WC++ + PWAI
Sbjct: 240 TRRRQPQQQHGPRPWCRRLTEGLPWAI 266
>NCU09069.1 NCU09069.1 hypothetical protein (1189 - 21)
Length = 323
Score = 26.2 bits (56), Expect = 4.1
Identities = 16/39 (41%), Positives = 21/39 (53%)
Frame = +3
Query: 264 RKPPTNASPAPLVSTSFSLGNRITGNVFTFPSSATTTGS 380
R PP+ SPAP V TS +L + + P SA +T S
Sbjct: 269 RSPPSVRSPAPSVPTSPTLSSPGKRKKSSPPGSADSTTS 307
>NCU09137.1 NCU09137.1 predicted protein (63725 - 62007)
Length = 572
Score = 26.2 bits (56), Expect = 4.1
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = +3
Query: 273 PTNASPAPLVSTSFSLGNRITGNVFTFPSSATTT 374
P++A P LV SFS+G+R + PS +++
Sbjct: 188 PSSAKPPALVQNSFSIGDRPDDDCSKAPSVTSSS 221
>NCU08173.1 NCU08173.1 predicted protein (61029 - 59470)
Length = 405
Score = 25.8 bits (55), Expect = 5.3
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = +2
Query: 239 ALPLNQLREEAANKRITSAIGVNKLL 316
A P+ R E AN I A+G++KLL
Sbjct: 310 AHPMTPARGEGANHAIKDAVGLSKLL 335
>NCU01418.1 NCU01418.1 hypothetical protein (9629 - 8885)
Length = 142
Score = 25.8 bits (55), Expect = 5.3
Identities = 17/41 (41%), Positives = 25/41 (60%), Gaps = 5/41 (12%)
Frame = +3
Query: 294 PLVSTSFSLGNRITGNV---FTFPSSATT--TGSAP*VITP 401
P+++TS + + TG V P+SA + TGSAP V+TP
Sbjct: 68 PIITTSSVICHSCTGYVNSTIPAPTSAGSVGTGSAPAVVTP 108
>NCU07849.1 NCU07849.1 hypothetical protein (34134 - 31515)
Length = 517
Score = 25.4 bits (54), Expect = 7.0
Identities = 12/39 (30%), Positives = 20/39 (50%)
Frame = -2
Query: 331 ILLPKEKLVDTNGAGDAFVGGFLSQLVQGKSIEDCVKAG 215
I +P ++ +T+G G + S L +G + VKAG
Sbjct: 238 IEMPYQRSRNTHGTGCSLASAIASNLAKGMDMVPAVKAG 276
>NCU06404.1 NCU06404.1 RAS-RELATED PROTEIN RAB1BV (98059 - 99017)
Length = 205
Score = 25.4 bits (54), Expect = 7.0
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = +2
Query: 221 LYAVLDALPLNQLREEAANKRITSAIGVNKLLLG 322
+Y V D N +R AN + GVNK+L+G
Sbjct: 89 VYDVTDERSFNNIRTWFANVEQHATEGVNKILIG 122
>NCU09482.1 NCU09482.1 predicted protein (17414 - 13175)
Length = 1395
Score = 25.4 bits (54), Expect = 7.0
Identities = 11/23 (47%), Positives = 13/23 (55%)
Frame = +1
Query: 346 LPSHPQPQLLDQHPE*SHLPGRP 414
LPSHP PQ + QH + P P
Sbjct: 555 LPSHPPPQQVQQHAVVTRPPQPP 577
>NCU08496.1 NCU08496.1 hypothetical protein (25054 - 28983)
Length = 1290
Score = 25.0 bits (53), Expect = 9.1
Identities = 10/13 (76%), Positives = 10/13 (76%)
Frame = +1
Query: 352 SHPQPQLLDQHPE 390
SHPQPQLL PE
Sbjct: 944 SHPQPQLLPDAPE 956
>NCU01786.1 NCU01786.1 hypothetical protein (3284 - 4825)
Length = 431
Score = 25.0 bits (53), Expect = 9.1
Identities = 13/37 (35%), Positives = 18/37 (48%)
Frame = +2
Query: 242 LPLNQLREEAANKRITSAIGVNKLLLGQ*DHRECFYL 352
LPLNQ +E +IT + +L+G R C L
Sbjct: 297 LPLNQESQERRPTKITDRQNASMMLVGNVTDRVCILL 333
>NCU02112.1 NCU02112.1 hypothetical protein (49915 - 44489)
Length = 1808
Score = 25.0 bits (53), Expect = 9.1
Identities = 6/17 (35%), Positives = 12/17 (70%)
Frame = +2
Query: 353 PILSHNYWISTLSNHTC 403
P + +YW+++ +NH C
Sbjct: 87 PFAARDYWVASTANHRC 103
Database: /phillip/Ncr/Ncr_P
Posted date: May 20, 2002 12:05 PM
Number of letters in database: 3,158,374
Number of sequences in database: 6531
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2436779
Number of Sequences: 6531
Number of extensions: 47904
Number of successful extensions: 153
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 153
length of query: 139
length of database: 3,158,374
effective HSP length: 42
effective length of query: 97
effective length of database: 2,884,072
effective search space: 279754984
effective search space used: 279754984
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)