BLASTX 2.1.3 [Apr-1-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query=
/phillip/projects/Xu/Fgr-S/seq_dir/blast_NcrP/Fgr-S_4_E05_T7.seq
(449 letters)
Database: /phillip/Ncr/Ncr_P
6531 sequences; 3,158,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
NCU07830.1 NCU07830.1 40S RIBOSOMAL PROTEIN S14 (CRP2) (35881 - ... 124 1e-29
NCU08426.1 NCU08426.1 hypothetical protein (234 - 3718) 26 4.5
NCU00717.1 NCU00717.1 hypothetical protein (62948 - 59975) 25 7.7
NCU07130.1 NCU07130.1 hypothetical protein (57853 - 59342) 25 7.7
NCU00030.1 NCU00030.1 hypothetical protein (115885 - 116883) 25 7.7
>NCU07830.1 NCU07830.1 40S RIBOSOMAL PROTEIN S14 (CRP2) (35881 -
36677)
Length = 150
Score = 124 bits (311), Expect = 1e-29
Identities = 64/82 (78%), Positives = 68/82 (82%)
Frame = +1
Query: 22 GMKVKADRDESSPYAAMLASQDVATRCKELGITSLHIKLRAXXXXXXXXXXXXAQSALRA 201
GMKVKADRDESSPYAAMLA+QDVA RCKELGIT+LHIK+RA AQSALRA
Sbjct: 58 GMKVKADRDESSPYAAMLAAQDVAARCKELGITALHIKIRATGGNGTKTPGPGAQSALRA 117
Query: 202 LARSGMKIGRIEDVTPVPTDST 267
LARSGMKIGRIEDVTP P+DST
Sbjct: 118 LARSGMKIGRIEDVTPTPSDST 139
>NCU08426.1 NCU08426.1 hypothetical protein (234 - 3718)
Length = 933
Score = 26.2 bits (56), Expect = 4.5
Identities = 9/24 (37%), Positives = 15/24 (62%), Gaps = 1/24 (4%)
Frame = -2
Query: 193 EQTELQVQVSW-SCCLQWHGA*CA 125
+Q + + +W CC +WHGA C+
Sbjct: 383 DQINVDLVRTWLKCCREWHGAECS 406
>NCU00717.1 NCU00717.1 hypothetical protein (62948 - 59975)
Length = 971
Score = 25.4 bits (54), Expect = 7.7
Identities = 12/37 (32%), Positives = 17/37 (45%)
Frame = -2
Query: 421 TANDPQQSKIKAPHDIHRNSRTTQRGVSFLIATSRVG 311
T DPQ +K PH +R ++ + TS VG
Sbjct: 188 TVPDPQPDMLKPPHRSEVEARNRADKLAHAVGTSSVG 224
>NCU07130.1 NCU07130.1 hypothetical protein (57853 - 59342)
Length = 445
Score = 25.4 bits (54), Expect = 7.7
Identities = 8/27 (29%), Positives = 14/27 (51%)
Frame = +3
Query: 147 WRQQDQDTWTWSSVCSQGSCSFWDENW 227
W D+ +W S + ++G WD N+
Sbjct: 335 WDFTDKYSWVPSEIPTEGEACMWDNNY 361
>NCU00030.1 NCU00030.1 hypothetical protein (115885 - 116883)
Length = 332
Score = 25.4 bits (54), Expect = 7.7
Identities = 13/34 (38%), Positives = 17/34 (49%), Gaps = 1/34 (2%)
Frame = +3
Query: 135 APCHWRQQDQD-TWTWSSVCSQGSCSFWDENWAH 233
A C W Q D T+ S++C Q F + WAH
Sbjct: 159 ADCKWSQAAMDDTFYLSNMCPQVGEGFNRDYWAH 192
Database: /phillip/Ncr/Ncr_P
Posted date: May 20, 2002 12:05 PM
Number of letters in database: 3,158,374
Number of sequences in database: 6531
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2459307
Number of Sequences: 6531
Number of extensions: 46027
Number of successful extensions: 116
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 116
length of query: 149
length of database: 3,158,374
effective HSP length: 42
effective length of query: 107
effective length of database: 2,884,072
effective search space: 308595704
effective search space used: 308595704
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)