BLASTX 2.1.3 [Apr-1-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query=
/phillip/projects/Xu/Fgr-S/seq_dir/blast_NcrP/Fgr-S_4_E09_T7.seq
(348 letters)
Database: /phillip/Ncr/Ncr_P
6531 sequences; 3,158,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
NCU02214.1 NCU02214.1 hypothetical protein (8859 - 5717) 31 0.096
NCU09986.1 NCU09986.1 predicted protein (2110 - 1694) 31 0.096
NCU07262.1 NCU07262.1 hypothetical protein (37046 - 38929) 30 0.21
NCU09699.1 NCU09699.1 hypothetical protein (1799 - 5635) 29 0.47
NCU02216.1 NCU02216.1 hypothetical protein (14635 - 12969) 27 1.4
NCU02786.1 NCU02786.1 hypothetical protein (5269 - 6474) 27 1.8
NCU07532.1 NCU07532.1 predicted protein (35712 - 33691) 26 3.1
NCU08487.1 NCU08487.1 hypothetical protein (2568 - 6698) 26 3.1
NCU01839.1 NCU01839.1 hypothetical protein (76690 - 73892) 22 5.0
NCU01670.1 NCU01670.1 hypothetical protein (30503 - 29827) 25 5.3
NCU06376.1 NCU06376.1 predicted protein (137542 - 135719) 25 6.9
NCU02178.1 NCU02178.1 hypothetical protein ( (AY029284) suppress... 25 6.9
NCU06990.1 NCU06990.1 hypothetical protein (144404 - 149407) 25 9.0
NCU01855.1 NCU01855.1 hypothetical protein (28131 - 28878) 25 9.0
>NCU02214.1 NCU02214.1 hypothetical protein (8859 - 5717)
Length = 1018
Score = 31.2 bits (69), Expect = 0.096
Identities = 16/43 (37%), Positives = 20/43 (46%)
Frame = -2
Query: 287 PP*YHATFAGTIHPPYIPQNSHHTYLLWHFHSHSEIYFHATFH 159
PP + GT H + +HH YLL H H H + HA H
Sbjct: 888 PPKPSSYHIGTHHNSH----NHHNYLLHHHHHHPHAHAHAHAH 926
>NCU09986.1 NCU09986.1 predicted protein (2110 - 1694)
Length = 138
Score = 31.2 bits (69), Expect = 0.096
Identities = 15/52 (28%), Positives = 25/52 (47%)
Frame = -2
Query: 260 GTIHPPYIPQNSHHTYLLWHFHSHSEIYFHATFHCSIYYDTLHHCHIALHDH 105
G P + ++HH + H H H ++ H + + T+HH H+A H H
Sbjct: 81 GRQRDPVVRFDAHHQHQHQHTHHHPQLQHHHHYQ----HHTVHHPHVA-HTH 127
>NCU07262.1 NCU07262.1 hypothetical protein (37046 - 38929)
Length = 604
Score = 30.0 bits (66), Expect = 0.21
Identities = 16/61 (26%), Positives = 25/61 (40%)
Frame = -2
Query: 287 PP*YHATFAGTIHPPYIPQNSHHTYLLWHFHSHSEIYFHATFHCSIYYDTLHHCHIALHD 108
PP ++A H Q++ + Y H H+H+ + H H + H H HD
Sbjct: 69 PPSRRGSYATGAHSHKKTQSNDYNYSYTHNHNHNHDHEHDHDHSHDHSHDHDHDHDHAHD 128
Query: 107 H 105
H
Sbjct: 129 H 129
Score = 26.6 bits (57), Expect = 2.4
Identities = 13/41 (31%), Positives = 20/41 (48%)
Frame = -2
Query: 227 SHHTYLLWHFHSHSEIYFHATFHCSIYYDTLHHCHIALHDH 105
S H++ H HS S+ + H+ H + + H H HDH
Sbjct: 374 SGHSHSHSHSHSDSDAHGHSHSHGHSHSHSHDHKHDHKHDH 414
>NCU09699.1 NCU09699.1 hypothetical protein (1799 - 5635)
Length = 1278
Score = 28.9 bits (63), Expect = 0.47
Identities = 16/59 (27%), Positives = 28/59 (47%)
Frame = -2
Query: 251 HPPYIPQNSHHTYLLWHFHSHSEIYFHATFHCSIYYDTLHHCHIALHDHVVDIVFVAKP 75
HP P + HH + H H E H+ S ++ HH H++L ++D +++P
Sbjct: 499 HPSSPPHHHHHYPPPYPSHPHHEPQHHSVVTSSHHHQP-HHPHVSL-PPIIDPQMISQP 555
>NCU02216.1 NCU02216.1 hypothetical protein (14635 - 12969)
Length = 493
Score = 27.3 bits (59), Expect = 1.4
Identities = 10/23 (43%), Positives = 13/23 (56%)
Frame = +2
Query: 131 DGACHNKWNSGKLHGNISQNGYG 199
DG C +WN GK G++S G
Sbjct: 382 DGTCGYRWNVGKYDGDVSNGPAG 404
>NCU02786.1 NCU02786.1 hypothetical protein (5269 - 6474)
Length = 347
Score = 26.9 bits (58), Expect = 1.8
Identities = 15/42 (35%), Positives = 22/42 (51%)
Frame = -3
Query: 304 PSTFASLPSITQLSPVPYTHHTFLKTATIPTYYGISIAILRY 179
PS AS P + V ++ TAT+PT G S+++L Y
Sbjct: 8 PSALASTPGLPPQPQVAFSSDNSRVTATLPT--GESVSVLLY 47
>NCU07532.1 NCU07532.1 predicted protein (35712 - 33691)
Length = 502
Score = 26.2 bits (56), Expect = 3.1
Identities = 12/43 (27%), Positives = 20/43 (45%)
Frame = -2
Query: 230 NSHHTYLLWHFHSHSEIYFHATFHCSIYYDTLHHCHIALHDHV 102
++H + H H+HS + H+ FH + H H DH+
Sbjct: 262 HAHSSMSHSHSHTHSHTHTHSHFHS---HALSPHAHAQAQDHL 301
>NCU08487.1 NCU08487.1 hypothetical protein (2568 - 6698)
Length = 1331
Score = 26.2 bits (56), Expect = 3.1
Identities = 16/47 (34%), Positives = 20/47 (42%), Gaps = 2/47 (4%)
Frame = -2
Query: 272 ATFAG--TIHPPYIPQNSHHTYLLWHFHSHSEIYFHATFHCSIYYDT 138
+TFA T PP +P + TY H + HS H H Y T
Sbjct: 869 STFAAMSTPPPPLLPASPADTYNHTHAYVHSNCQNHGHGHVHAYMPT 915
>NCU01839.1 NCU01839.1 hypothetical protein (76690 - 73892)
Length = 893
Score = 21.9 bits (45), Expect(2) = 5.0
Identities = 7/22 (31%), Positives = 14/22 (62%)
Frame = -2
Query: 89 FVAKPPFIILSYMLLLIHCTSW 24
+V +PP +I S ++ C++W
Sbjct: 104 YVRRPPGLIKSLSKKIMFCSAW 125
Score = 21.6 bits (44), Expect(2) = 5.0
Identities = 8/16 (50%), Positives = 11/16 (68%)
Frame = -1
Query: 252 TPTIHSSKQPPYLPIM 205
TPT S PP+LP++
Sbjct: 82 TPTSLSPPPPPHLPLL 97
>NCU01670.1 NCU01670.1 hypothetical protein (30503 - 29827)
Length = 186
Score = 25.4 bits (54), Expect = 5.3
Identities = 10/28 (35%), Positives = 16/28 (56%), Gaps = 3/28 (10%)
Frame = +2
Query: 104 HDHAKQYDNDG---ACHNKWNSGKLHGN 178
H H+ +D+DG C++ G+ HGN
Sbjct: 118 HRHSHDHDHDGREGGCNHDHGRGRKHGN 145
>NCU06376.1 NCU06376.1 predicted protein (137542 - 135719)
Length = 564
Score = 25.0 bits (53), Expect = 6.9
Identities = 14/43 (32%), Positives = 19/43 (43%)
Frame = -3
Query: 337 AEVSMDYTHSHPSTFASLPSITQLSPVPYTHHTFLKTATIPTY 209
A++ + Y PSIT +S T HTF T PT+
Sbjct: 232 AQIRLKYEPISSQQHLPPPSITNISG-KVTAHTFFNAGTTPTF 273
>NCU02178.1 NCU02178.1 hypothetical protein ( (AY029284) suppressor
of ascus dominance [Neur
Length = 1638
Score = 25.0 bits (53), Expect = 6.9
Identities = 9/17 (52%), Positives = 14/17 (81%)
Frame = -3
Query: 319 YTHSHPSTFASLPSITQ 269
++ P++FASLPS+TQ
Sbjct: 75 FSRGKPASFASLPSLTQ 91
>NCU06990.1 NCU06990.1 hypothetical protein (144404 - 149407)
Length = 1182
Score = 24.6 bits (52), Expect = 9.0
Identities = 13/41 (31%), Positives = 17/41 (40%), Gaps = 4/41 (9%)
Frame = -2
Query: 194 SHSEIYFHATFHCSIYYDTLHH----CHIALHDHVVDIVFV 84
S S Y H H S Y +LH C I LH + + +
Sbjct: 737 SRSNYYKHENHHASSVYVSLHMLGAVCKIMLHREYIPFIAI 777
>NCU01855.1 NCU01855.1 hypothetical protein (28131 - 28878)
Length = 162
Score = 24.6 bits (52), Expect = 9.0
Identities = 14/39 (35%), Positives = 18/39 (45%)
Frame = -3
Query: 316 THSHPSTFASLPSITQLSPVPYTHHTFLKTATIPTYYGI 200
TH HP T+ PS+ +L TF + TYY I
Sbjct: 47 TH-HPPTYYIPPSLVRLPLATTPRSTFCEWKGTATYYSI 84
Database: /phillip/Ncr/Ncr_P
Posted date: May 20, 2002 12:05 PM
Number of letters in database: 3,158,374
Number of sequences in database: 6531
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2536845
Number of Sequences: 6531
Number of extensions: 57797
Number of successful extensions: 210
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 187
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 204
length of query: 116
length of database: 3,158,374
effective HSP length: 42
effective length of query: 73
effective length of database: 2,884,072
effective search space: 210537256
effective search space used: 210537256
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)