BLASTX 2.1.3 [Apr-1-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query=
/phillip/projects/Xu/Fgr-S/seq_dir/blast_NcrP/Fgr-S_4_G01_T7.seq
(266 letters)
Database: /phillip/Ncr/Ncr_P
6531 sequences; 3,158,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
NCU06925.1 NCU06925.1 hypothetical protein (164568 - 160758) 32 0.038
NCU07813.1 NCU07813.1 predicted protein (6843 - 8360) 30 0.19
NCU07496.1 NCU07496.1 hypothetical protein (67709 - 74407) 29 0.25
NCU09314.1 NCU09314.1 predicted protein (36972 - 34924) 28 0.55
NCU07174.1 NCU07174.1 hypothetical protein (84044 - 82659) 28 0.71
NCU08163.1 NCU08163.1 hypothetical protein (28330 - 29516) 27 0.93
NCU09355.1 NCU09355.1 predicted protein (67893 - 66983) 27 0.93
NCU09044.1 NCU09044.1 predicted protein (88384 - 88120) 27 1.6
NCU07976.1 NCU07976.1 predicted protein (14459 - 13693) 26 2.1
NCU08951.1 NCU08951.1 hypothetical protein (8978 - 8143) 26 2.7
NCU07218.1 NCU07218.1 predicted protein (214963 - 216525) 25 3.5
NCU07877.1 NCU07877.1 predicted protein (6212 - 9768) 25 4.6
NCU07211.1 NCU07211.1 predicted protein (201266 - 202686) 25 4.6
NCU00201.1 NCU00201.1 predicted protein (13118 - 15504) 25 4.6
NCU09454.1 NCU09454.1 predicted protein (4202 - 3149) 25 6.1
NCU10037.1 NCU10037.1 predicted protein (5023 - 3866) 25 6.1
NCU01699.1 NCU01699.1 hypothetical protein (93368 - 92148) 24 7.9
NCU01180.1 NCU01180.1 predicted protein (84709 - 81877) 24 7.9
>NCU06925.1 NCU06925.1 hypothetical protein (164568 - 160758)
Length = 958
Score = 32.0 bits (71), Expect = 0.038
Identities = 17/49 (34%), Positives = 26/49 (52%)
Frame = -2
Query: 154 DKGNNQDKGNKGTAQRPRSSQDKRNNQDKANK*DKCNNQDKGNKGTSAA 8
D+ ++D+G GTAQ S K+ N+ K+ K N+DK S+A
Sbjct: 34 DESGSEDEGADGTAQEAGSGSTKKKNKKKSKK----KNKDKSASTESSA 78
>NCU07813.1 NCU07813.1 predicted protein (6843 - 8360)
Length = 477
Score = 29.6 bits (65), Expect = 0.19
Identities = 12/60 (20%), Positives = 24/60 (40%)
Frame = -2
Query: 181 TTQLLRSSQDKGNNQDKGNKGTAQRPRSSQDKRNNQDKANK*DKCNNQDKGNKGTSAATT 2
T + ++ + NN + N ++ + NN + N + NN + N + TT
Sbjct: 66 TIKTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTT 125
Score = 29.6 bits (65), Expect = 0.19
Identities = 12/60 (20%), Positives = 25/60 (41%)
Frame = -2
Query: 181 TTQLLRSSQDKGNNQDKGNKGTAQRPRSSQDKRNNQDKANK*DKCNNQDKGNKGTSAATT 2
TT ++++ + NN + N ++ + NN + N + NN + N + T
Sbjct: 63 TTPTIKTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNT 122
Score = 28.5 bits (62), Expect = 0.42
Identities = 12/54 (22%), Positives = 23/54 (42%)
Frame = -2
Query: 163 SSQDKGNNQDKGNKGTAQRPRSSQDKRNNQDKANK*DKCNNQDKGNKGTSAATT 2
++ + NN + N ++ + NN + N + NN + N T+ A T
Sbjct: 76 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTTAIT 129
Score = 28.5 bits (62), Expect = 0.42
Identities = 11/53 (20%), Positives = 22/53 (40%)
Frame = -2
Query: 163 SSQDKGNNQDKGNKGTAQRPRSSQDKRNNQDKANK*DKCNNQDKGNKGTSAAT 5
++ + NN + N ++ + NN + N + NN + N T+ T
Sbjct: 74 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTT 126
Score = 28.5 bits (62), Expect = 0.42
Identities = 11/54 (20%), Positives = 22/54 (40%)
Frame = -2
Query: 163 SSQDKGNNQDKGNKGTAQRPRSSQDKRNNQDKANK*DKCNNQDKGNKGTSAATT 2
++ + NN + N ++ + NN + N + NN + N + TT
Sbjct: 73 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTT 126
Score = 28.1 bits (61), Expect = 0.55
Identities = 12/54 (22%), Positives = 23/54 (42%)
Frame = -2
Query: 163 SSQDKGNNQDKGNKGTAQRPRSSQDKRNNQDKANK*DKCNNQDKGNKGTSAATT 2
++ + NN + N ++ + NN + N + NN + T+A TT
Sbjct: 77 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTTAITT 130
Score = 27.7 bits (60), Expect = 0.71
Identities = 12/60 (20%), Positives = 24/60 (40%)
Frame = -2
Query: 181 TTQLLRSSQDKGNNQDKGNKGTAQRPRSSQDKRNNQDKANK*DKCNNQDKGNKGTSAATT 2
T + ++ + NN + N ++ + NN + N + NN + N + TT
Sbjct: 64 TPTIKTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTT 123
>NCU07496.1 NCU07496.1 hypothetical protein (67709 - 74407)
Length = 2140
Score = 29.3 bits (64), Expect = 0.25
Identities = 13/60 (21%), Positives = 27/60 (44%)
Frame = -2
Query: 181 TTQLLRSSQDKGNNQDKGNKGTAQRPRSSQDKRNNQDKANK*DKCNNQDKGNKGTSAATT 2
TT ++ + NN + N ++ + NN + N + NN + ++ TSA+ +
Sbjct: 1393 TTTTTTAAINNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTSRATSASAS 1452
>NCU09314.1 NCU09314.1 predicted protein (36972 - 34924)
Length = 576
Score = 28.1 bits (61), Expect = 0.55
Identities = 12/51 (23%), Positives = 30/51 (58%)
Frame = -2
Query: 175 QLLRSSQDKGNNQDKGNKGTAQRPRSSQDKRNNQDKANK*DKCNNQDKGNK 23
++ S +++ ++ D+G+K +++DK+ N +++ + N+ KGNK
Sbjct: 214 EITSSDEEEDSDDDEGSKDNKDT-ENNEDKKGNVNRSETNNANNHSKKGNK 263
>NCU07174.1 NCU07174.1 hypothetical protein (84044 - 82659)
Length = 461
Score = 27.7 bits (60), Expect = 0.71
Identities = 13/49 (26%), Positives = 29/49 (58%), Gaps = 1/49 (2%)
Frame = -2
Query: 166 RSSQDKGNNQDKGNKGTAQRPRSSQDK-RNNQDKANK*DKCNNQDKGNK 23
RSS +G+ KG++G + R +D+ R ++D+ ++ D+ + +G +
Sbjct: 157 RSSSARGHAGGKGDRGGDREGRGDRDRDRGDKDRGDRGDREKGEKEGGR 205
>NCU08163.1 NCU08163.1 hypothetical protein (28330 - 29516)
Length = 212
Score = 27.3 bits (59), Expect = 0.93
Identities = 14/51 (27%), Positives = 25/51 (48%), Gaps = 1/51 (1%)
Frame = -2
Query: 151 KGNNQDKGNKGTAQRPRSSQDKRNNQDKANK*D-KCNNQDKGNKGTSAATT 2
K ++KG + ++ + +D ++DK K D K KG++ TS T
Sbjct: 89 KKKEEEKGKEADKEKEKDKKDGEKSKDKDEKKDEKDQENSKGSRSTSREGT 139
>NCU09355.1 NCU09355.1 predicted protein (67893 - 66983)
Length = 246
Score = 27.3 bits (59), Expect = 0.93
Identities = 11/32 (34%), Positives = 22/32 (68%)
Frame = -2
Query: 103 RSSQDKRNNQDKANK*DKCNNQDKGNKGTSAA 8
+ +DK++ +DK +K DK + +DK G+S++
Sbjct: 209 KKKKDKKDKKDKHHKKDKHHKKDKHRGGSSSS 240
>NCU09044.1 NCU09044.1 predicted protein (88384 - 88120)
Length = 58
Score = 26.6 bits (57), Expect = 1.6
Identities = 10/48 (20%), Positives = 20/48 (40%)
Frame = -2
Query: 169 LRSSQDKGNNQDKGNKGTAQRPRSSQDKRNNQDKANK*DKCNNQDKGN 26
+R+ + NN + N ++ + NN + N + NN + N
Sbjct: 1 MRTHNENNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN 48
Score = 24.6 bits (52), Expect = 6.1
Identities = 9/45 (20%), Positives = 19/45 (42%)
Frame = -2
Query: 160 SQDKGNNQDKGNKGTAQRPRSSQDKRNNQDKANK*DKCNNQDKGN 26
+++ NN + N ++ + NN + N + NN + N
Sbjct: 5 NENNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN 49
>NCU07976.1 NCU07976.1 predicted protein (14459 - 13693)
Length = 231
Score = 26.2 bits (56), Expect = 2.1
Identities = 14/48 (29%), Positives = 24/48 (49%), Gaps = 1/48 (2%)
Frame = -2
Query: 163 SSQDKGNNQDKGNKGTA-QRPRSSQDKRNNQDKANK*DKCNNQDKGNK 23
+++ K N ++ GT P S K+N+ D N+ D N+D N+
Sbjct: 9 TAEKKDENTEQTQDGTTGSNPEISNVKQNDNDDNNEEDDNENRDNQNQ 56
>NCU08951.1 NCU08951.1 hypothetical protein (8978 - 8143)
Length = 242
Score = 25.8 bits (55), Expect = 2.7
Identities = 10/43 (23%), Positives = 23/43 (53%)
Frame = -2
Query: 178 TQLLRSSQDKGNNQDKGNKGTAQRPRSSQDKRNNQDKANK*DK 50
T ++ +DK +DK K ++ ++K++ ++K K +K
Sbjct: 4 TDKIKEKKDKSEKKDKKEKKMSEEAGVKKEKKDKKEKKEKTEK 46
>NCU07218.1 NCU07218.1 predicted protein (214963 - 216525)
Length = 520
Score = 25.4 bits (54), Expect = 3.5
Identities = 13/53 (24%), Positives = 20/53 (37%), Gaps = 2/53 (3%)
Frame = -2
Query: 154 DKGNNQDKGNKGTAQRPRSSQDKRNNQDKANK*DKCNN--QDKGNKGTSAATT 2
+ +N + N + D NN + N + NN D N T+ TT
Sbjct: 451 NNNHNDNNDNNNNNNNNNNMNDNNNNHNNMNDNNNNNNNMNDNNNNNTTTTTT 503
Score = 24.6 bits (52), Expect = 6.1
Identities = 11/48 (22%), Positives = 18/48 (36%)
Frame = -2
Query: 145 NNQDKGNKGTAQRPRSSQDKRNNQDKANK*DKCNNQDKGNKGTSAATT 2
NN + N + + NN + N + N + N T+ TT
Sbjct: 457 NNDNNNNNNNNNNMNDNNNNHNNMNDNNNNNNNMNDNNNNNTTTTTTT 504
>NCU07877.1 NCU07877.1 predicted protein (6212 - 9768)
Length = 831
Score = 25.0 bits (53), Expect = 4.6
Identities = 16/57 (28%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Frame = -2
Query: 172 LLRSSQDKGNNQDKG-NKGTAQRPRSSQDKRNNQDKANK*DKCNNQDKGNKGTSAAT 5
LL S G +++ G +K TA+ +++DK N N N + +K T+ T
Sbjct: 262 LLEESNGTGRDKNTGKSKNTAKSKNTAKDKNNGNQAGNGNGGTANDNGKSKHTTNDT 318
>NCU07211.1 NCU07211.1 predicted protein (201266 - 202686)
Length = 391
Score = 25.0 bits (53), Expect = 4.6
Identities = 10/47 (21%), Positives = 19/47 (40%)
Frame = -2
Query: 154 DKGNNQDKGNKGTAQRPRSSQDKRNNQDKANK*DKCNNQDKGNKGTS 14
D N + +RP + D+ +N + N + NN + N +
Sbjct: 85 DNAGNANNTTANNKKRPAEAMDQSDNNNNNNNNNNNNNNNNNNNNNN 131
Score = 24.3 bits (51), Expect = 7.9
Identities = 9/45 (20%), Positives = 19/45 (42%)
Frame = -2
Query: 160 SQDKGNNQDKGNKGTAQRPRSSQDKRNNQDKANK*DKCNNQDKGN 26
+ D+ +N + N ++ + NN + N + NN + N
Sbjct: 104 AMDQSDNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN 148
>NCU00201.1 NCU00201.1 predicted protein (13118 - 15504)
Length = 706
Score = 25.0 bits (53), Expect = 4.6
Identities = 15/81 (18%), Positives = 32/81 (38%)
Frame = -2
Query: 244 TIQLLHSSQXXXXXXXXXXXGTTQLLRSSQDKGNNQDKGNKGTAQRPRSSQDKRNNQDKA 65
T++ S++ +T L D NN + N+ T + + ++ K+
Sbjct: 75 TVESGKSTRLSTANPALQQQSSTSLDLPGHDANNNTNNNNQNTDNESNTDPNASDSDAKS 134
Query: 64 NK*DKCNNQDKGNKGTSAATT 2
N K + + K T++ T+
Sbjct: 135 NVSSKTSLSKRSIKSTNSTTS 155
>NCU09454.1 NCU09454.1 predicted protein (4202 - 3149)
Length = 101
Score = 24.6 bits (52), Expect = 6.1
Identities = 10/47 (21%), Positives = 19/47 (40%)
Frame = -2
Query: 166 RSSQDKGNNQDKGNKGTAQRPRSSQDKRNNQDKANK*DKCNNQDKGN 26
R ++ NN + N ++ + NN + N + NN + N
Sbjct: 24 RKVEEHRNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN 70
Score = 24.3 bits (51), Expect = 7.9
Identities = 9/44 (20%), Positives = 18/44 (40%)
Frame = -2
Query: 157 QDKGNNQDKGNKGTAQRPRSSQDKRNNQDKANK*DKCNNQDKGN 26
+ + NN + N ++ + NN + N + NN + N
Sbjct: 28 EHRNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN 71
>NCU10037.1 NCU10037.1 predicted protein (5023 - 3866)
Length = 385
Score = 24.6 bits (52), Expect = 6.1
Identities = 11/32 (34%), Positives = 17/32 (52%)
Frame = -2
Query: 166 RSSQDKGNNQDKGNKGTAQRPRSSQDKRNNQD 71
+SSQ+ + + N+ + PR S R NQD
Sbjct: 340 QSSQESQDTSSQTNQEASGTPRQSTSSRPNQD 371
>NCU01699.1 NCU01699.1 hypothetical protein (93368 - 92148)
Length = 376
Score = 24.3 bits (51), Expect = 7.9
Identities = 11/32 (34%), Positives = 17/32 (52%)
Frame = -2
Query: 157 QDKGNNQDKGNKGTAQRPRSSQDKRNNQDKAN 62
+DKGN+ N S+D ++N+DK N
Sbjct: 39 RDKGNDNQNNNANA----NGSKDNKDNKDKNN 66
>NCU01180.1 NCU01180.1 predicted protein (84709 - 81877)
Length = 843
Score = 24.3 bits (51), Expect = 7.9
Identities = 13/49 (26%), Positives = 22/49 (44%)
Frame = -2
Query: 178 TQLLRSSQDKGNNQDKGNKGTAQRPRSSQDKRNNQDKANK*DKCNNQDK 32
T+ R + +K N GN Q+ + +D ++K K N+DK
Sbjct: 736 TRPSRDALNKDANSGAGNSSEGGSDEQQQEVKEVEDVSDKNQKEKNKDK 784
Database: /phillip/Ncr/Ncr_P
Posted date: May 20, 2002 12:05 PM
Number of letters in database: 3,158,374
Number of sequences in database: 6531
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 685561
Number of Sequences: 6531
Number of extensions: 5636
Number of successful extensions: 138
Number of sequences better than 10.0: 36
Number of HSP's better than 10.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 111
length of query: 88
length of database: 3,158,374
effective HSP length: 39
effective length of query: 49
effective length of database: 2,903,665
effective search space: 142279585
effective search space used: 142279585
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)