BLASTX 2.1.3 [Apr-1-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query=
/phillip/projects/Xu/Fgr-S/seq_dir/blast_NcrP/Fgr-S_4_G06_T7.seq
         (540 letters)

Database: /phillip/Ncr/Ncr_P
           6531 sequences; 3,158,374 total letters

Searching..................................................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

NCU08502.1 NCU08502.1 hypothetical protein (59423 - 58145)            168  7e-43
NCU09315.1 NCU09315.1 hypothetical protein (39822 - 37600)             28  1.5
NCU09005.1 NCU09005.1 hypothetical protein (100850 - 99347)            27  2.6
NCU08103.1 NCU08103.1 predicted protein (173736 - 172384)              27  4.4
NCU06855.1 NCU06855.1 predicted protein (52556 - 51054)                27  4.4
NCU06627.1 NCU06627.1 hypothetical protein (4440 - 683)                26  5.8
NCU01349.1 NCU01349.1 hypothetical protein (188653 - 192303)           25  9.9

>NCU08502.1 NCU08502.1 hypothetical protein (59423 - 58145)
          Length = 239

 Score =  168 bits (426), Expect = 7e-43
 Identities = 93/173 (53%), Positives = 115/173 (65%), Gaps = 2/173 (1%)
 Frame = +3

Query: 24  VEIDDDQKLRNLYDKRISQEVVGDLLGEEFKGYIFKIMGGCDKQGFPMKQGVLTSGRVRL 203
           +E++D++KLR+  +KR+  EV  D LG+E+KGYI +I GG DKQGFPMKQGV+   RVRL
Sbjct: 16  IEVEDERKLRHFIEKRMGAEVPADPLGDEWKGYILRITGGNDKQGFPMKQGVIAPNRVRL 75

Query: 204 LLHRGTPCFXXXXXXXXXXXXXXXXXCIVSQDLSVINLVIVKKGENDLPGLTDTEKPRMR 383
           LL  G  C+                 CIV  DLSV+ L IVK+GE D+PGLTD   P+  
Sbjct: 76  LLSDGHSCY--RARRTGERKRKSVRGCIVGSDLSVLALAIVKQGEQDIPGLTDVVHPKRL 133

Query: 384 GPKRASKIKKLFNLGKDDDVRSYVNTYRRTFLNK-KGKK-VSKAPKIQRLVTP 536
           GPKRA+KI++ F L KDDDVR YV   RR    K +GKK  +KAPKIQRLVTP
Sbjct: 134 GPKRATKIRRFFGLSKDDDVRKYV--IRREVQPKGEGKKPYTKAPKIQRLVTP 184



>NCU09315.1 NCU09315.1 hypothetical protein (39822 - 37600)
          Length = 718

 Score = 28.1 bits (61), Expect = 1.5
 Identities = 20/57 (35%), Positives = 24/57 (42%)
 Frame = -2

Query: 341 ILTLLDNHQVDNRQVLADNATTDGLPPALTITPAKPTEARCAPVKQKADTPRS*HSL 171
           I+T L    +D  Q  A    T GLPP  +   AKP     A +      P S HSL
Sbjct: 421 IITTLGTPALDPLQKAAAPLQTPGLPPPPSPAVAKPLALPSAALSSPQLKPDSAHSL 477



>NCU09005.1 NCU09005.1 hypothetical protein (100850 - 99347)
          Length = 456

 Score = 27.3 bits (59), Expect = 2.6
 Identities = 11/39 (28%), Positives = 22/39 (56%)
 Frame = +3

Query: 366 EKPRMRGPKRASKIKKLFNLGKDDDVRSYVNTYRRTFLN 482
           E+P    P+ +     ++++  DDD R Y + YRR +++
Sbjct: 224 EQPANPRPRTSRDTPTIYSVRHDDDGRIYPSRYRRDYIS 262



>NCU08103.1 NCU08103.1 predicted protein (173736 - 172384)
          Length = 450

 Score = 26.6 bits (57), Expect = 4.4
 Identities = 10/32 (31%), Positives = 20/32 (62%)
 Frame = -2

Query: 392 LGSPHPGLLSVGKAWQIILTLLDNHQVDNRQV 297
           L  PH  L ++ ++ ++ + LLD HQ D+ ++
Sbjct: 280 LSVPHVELAAIAQSLEVGIKLLDEHQPDSMKI 311



>NCU06855.1 NCU06855.1 predicted protein (52556 - 51054)
          Length = 500

 Score = 26.6 bits (57), Expect = 4.4
 Identities = 20/75 (26%), Positives = 34/75 (44%)
 Frame = +3

Query: 285 IVSQDLSVINLVIVKKGENDLPGLTDTEKPRMRGPKRASKIKKLFNLGKDDDVRSYVNTY 464
           I + DL    ++ ++KGE  L  L    K + +GPK+  K K+     K       V+  
Sbjct: 310 IATGDLLRNLILTLEKGETALEALARLGKDQTKGPKKVPKWKQKRQERKQGIDSMDVDDK 369

Query: 465 RRTFLNKKGKKVSKA 509
           +    + K KK+ +A
Sbjct: 370 KEEVEDPKQKKIREA 384



>NCU06627.1 NCU06627.1 hypothetical protein (4440 - 683)
          Length = 1190

 Score = 26.2 bits (56), Expect = 5.8
 Identities = 15/56 (26%), Positives = 31/56 (54%), Gaps = 2/56 (3%)
 Frame = +3

Query: 333  GENDLPGLTDTEKPRMRGPKRASKIKKLFNLGKDDDVRSYVNTYRR--TFLNKKGK 494
            G+ D+ G+ D +   ++  ++ASK+ K+F     + V S +   R    +++KKG+
Sbjct: 1058 GDKDVTGVIDGKPKEVQKAEKASKMGKVFYDINGEKVHSKLKPLRDVIVWIHKKGR 1113



>NCU01349.1 NCU01349.1 hypothetical protein (188653 - 192303)
          Length = 1216

 Score = 25.4 bits (54), Expect = 9.9
 Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = -3

Query: 208  SRRRTRPEVSTPCFIGKPCLS-QPPMILKI*PLNSSPRRS 92
            S R TRP +S+P    +P +S + P    I P +SS R S
Sbjct: 1013 SERPTRPSISSPSDTSRPSISTEAPPRPSISPDSSSTRPS 1052



  Database: /phillip/Ncr/Ncr_P
    Posted date:  May 20, 2002 12:05 PM
  Number of letters in database: 3,158,374
  Number of sequences in database:  6531
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2914709
Number of Sequences: 6531
Number of extensions: 64347
Number of successful extensions: 197
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 194
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 195
length of query: 180
length of database: 3,158,374
effective HSP length: 42
effective length of query: 137
effective length of database: 2,884,072
effective search space: 395117864
effective search space used: 395117864
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)