BLASTX 2.1.3 [Apr-1-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query=
/phillip/projects/Xu/Fgr-S/seq_dir/blast_NcrP/Fgr-S_4_G09_T7.seq
(390 letters)
Database: /phillip/Ncr/Ncr_P
6531 sequences; 3,158,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
NCU01200.1 NCU01200.1 hypothetical protein (151770 - 153070) 110 2e-25
NCU02614.1 NCU02614.1 hypothetical protein (93924 - 92638) 103 1e-23
NCU00726.1 NCU00726.1 hypothetical protein ( (X17692) cyclophili... 96 4e-21
NCU00578.1 NCU00578.1 hypothetical protein (118966 - 118422) 81 1e-16
NCU09819.1 NCU09819.1 hypothetical protein (10737 - 12787) 79 6e-16
NCU00181.1 NCU00181.1 hypothetical protein (33792 - 31999) 60 2e-10
NCU07179.1 NCU07179.1 hypothetical protein (100189 - 103520) 45 6e-06
NCU08514.1 NCU08514.1 hypothetical protein (9615 - 7990) 44 1e-05
NCU06701.1 NCU06701.1 hypothetical protein (84689 - 81161) 27 2.8
NCU06908.1 NCU06908.1 predicted protein (110522 - 114184) 26 4.8
NCU07481.1 NCU07481.1 hypothetical protein (8754 - 5185) 25 6.3
NCU09343.1 NCU09343.1 hypothetical protein (18770 - 17676) 25 6.3
NCU01959.1 NCU01959.1 hypothetical protein (1502 - 171) 25 6.3
NCU06832.1 NCU06832.1 hypothetical protein ( kinesin-like protei... 25 8.2
>NCU01200.1 NCU01200.1 hypothetical protein (151770 - 153070)
Length = 282
Score = 110 bits (274), Expect = 2e-25
Identities = 56/84 (66%), Positives = 63/84 (74%), Gaps = 1/84 (1%)
Frame = -1
Query: 366 KFADENFKLKHTGPGYLSMANAGRDTNGSQFFITTVTTSWLDGKHVVFGKVLSGMDVVYK 187
KF DENFKLKH+ G LSMANAG+DTNGSQFFITTV TSWLDGKHVVFG+VL G DVV K
Sbjct: 113 KFPDENFKLKHSKKGLLSMANAGKDTNGSQFFITTVITSWLDGKHVVFGEVLEGYDVVEK 172
Query: 186 VE-AEGKQNGTPKSKVVIADSGEV 118
+E + P + IA SGE+
Sbjct: 173 IENTKTGPRDAPAEPIKIAKSGEL 196
>NCU02614.1 NCU02614.1 hypothetical protein (93924 - 92638)
Length = 182
Score = 103 bits (258), Expect = 1e-23
Identities = 56/89 (62%), Positives = 62/89 (68%), Gaps = 3/89 (3%)
Frame = -1
Query: 375 GRSKFADENFKLKHTGPGYLSMANAGRDTNGSQFFITTVTTSWLDGKHVVFGKVLSGMDV 196
G FADENF LKH PG LSMANAG +TNGSQFFITTV T +LDGKHVVFGKV+ GMDV
Sbjct: 94 GTKSFADENFLLKHDTPGLLSMANAGPNTNGSQFFITTVPTPFLDGKHVVFGKVVDGMDV 153
Query: 195 VYKVE---AEGKQNGTPKSKVVIADSGEV 118
V K+E + P VVIA GE+
Sbjct: 154 VKKMENTKTGYRGKDVPNLDVVIAQCGEM 182
>NCU00726.1 NCU00726.1 hypothetical protein ( (X17692) cyclophilin
(cytosolic form) [Neurosp
Length = 180
Score = 95.9 bits (237), Expect = 4e-21
Identities = 54/96 (56%), Positives = 63/96 (65%), Gaps = 8/96 (8%)
Frame = -1
Query: 387 SGRPGRS----KFADENFKLKHTGPGYLSMANAGRDTNGSQFFITTVTTSWLDGKHVVFG 220
+G G+S KFADENF KH PG LSMANAG +TNGSQFF+TTV TSWLDG+HVVFG
Sbjct: 83 NGTGGKSIYGEKFADENFAKKHVRPGLLSMANAGPNTNGSQFFVTTVPTSWLDGRHVVFG 142
Query: 219 KVL--SGMDVVYKVEAEGKQNGTPK--SKVVIADSG 124
+V M VV +EA G +G + K I D G
Sbjct: 143 EVADDESMKVVKALEATGSSSGAIRYSKKPTIVDCG 178
>NCU00578.1 NCU00578.1 hypothetical protein (118966 - 118422)
Length = 153
Score = 80.9 bits (198), Expect = 1e-16
Identities = 43/73 (58%), Positives = 50/73 (67%), Gaps = 5/73 (6%)
Frame = -1
Query: 387 SGRPGRS----KFADENFK-LKHTGPGYLSMANAGRDTNGSQFFITTVTTSWLDGKHVVF 223
+GR G S KF DE LKHTG G LSMANAG +TNGSQFFIT T WLDGKH +F
Sbjct: 51 TGRGGSSIYGEKFEDEIHPGLKHTGAGVLSMANAGPNTNGSQFFITLAPTPWLDGKHTIF 110
Query: 222 GKVLSGMDVVYKV 184
G+V GM V+ ++
Sbjct: 111 GRVKKGMGVIRRM 123
>NCU09819.1 NCU09819.1 hypothetical protein (10737 - 12787)
Length = 632
Score = 78.6 bits (192), Expect = 6e-16
Identities = 35/62 (56%), Positives = 46/62 (73%)
Frame = -1
Query: 366 KFADENFKLKHTGPGYLSMANAGRDTNGSQFFITTVTTSWLDGKHVVFGKVLSGMDVVYK 187
+F DE LKH P +SMANAG +TNGSQFFITT T WLD KH +FG+ + G+DV+++
Sbjct: 550 EFEDEFSSLKHDKPYTVSMANAGPNTNGSQFFITTEKTPWLDNKHTIFGRGVQGLDVIHR 609
Query: 186 VE 181
+E
Sbjct: 610 IE 611
>NCU00181.1 NCU00181.1 hypothetical protein (33792 - 31999)
Length = 597
Score = 60.5 bits (145), Expect = 2e-10
Identities = 38/94 (40%), Positives = 52/94 (54%), Gaps = 8/94 (8%)
Frame = -1
Query: 387 SGRPGRSKFADENFKLKHTGP------GYLSMANAGRDTNGSQFFITTVTTSWLDGKHVV 226
+GR G S + +NF+ + GP G +SMAN G++TN SQFFIT S LD KH +
Sbjct: 388 TGRGGSSIWG-KNFEDEFEGPNTHSARGIVSMANKGKNTNSSQFFITYRPASHLDRKHTI 446
Query: 225 FGKVLSGMDVVYKVEAEGKQNGT--PKSKVVIAD 130
F KV+ G D +G+ P +K+VI D
Sbjct: 447 FAKVIEGQDTTLTAMENVATDGSDRPLNKIVIKD 480
>NCU07179.1 NCU07179.1 hypothetical protein (100189 - 103520)
Length = 803
Score = 45.4 bits (106), Expect = 6e-06
Identities = 31/76 (40%), Positives = 41/76 (53%), Gaps = 8/76 (10%)
Frame = -1
Query: 387 SGRPGRSKF-ADENFKLKHTGPGYLSMANAGRDTN------GSQFFITTV-TTSWLDGKH 232
SG P F A + KLKH G +SMA ++ GSQF +T T +LDGK
Sbjct: 75 SGDPSEKTFPALFHPKLKHLERGTVSMATVPHPSDPDTRLAGSQFIVTLGDNTDYLDGKA 134
Query: 231 VVFGKVLSGMDVVYKV 184
+FGKV+ G DV+ K+
Sbjct: 135 AIFGKVVEGFDVLEKI 150
>NCU08514.1 NCU08514.1 hypothetical protein (9615 - 7990)
Length = 541
Score = 44.3 bits (103), Expect = 1e-05
Identities = 32/79 (40%), Positives = 41/79 (51%), Gaps = 6/79 (7%)
Frame = -1
Query: 378 PGRSKFADE-NFKLKHTGPGYLSMANAGR-DTNGSQFFITTVTTSWLDGKHVVFGKVLSG 205
P F DE + +LK G L MAN G DTN SQFF T L GK+ +FG+V
Sbjct: 103 PHGVNFKDEFHSRLKFNRRGLLGMANEGAPDTNSSQFFFTLGKADELTGKNTMFGRVAG- 161
Query: 204 MDVVYKV----EAEGKQNG 160
D +Y + EAE ++ G
Sbjct: 162 -DTIYNLAKIGEAEVEEGG 179
>NCU06701.1 NCU06701.1 hypothetical protein (84689 - 81161)
Length = 879
Score = 26.6 bits (57), Expect = 2.8
Identities = 17/47 (36%), Positives = 20/47 (42%)
Frame = +1
Query: 22 TKTKNRPASNGSTTKTSHRSFHQSPFQVSSQRHFTAVGNDNLALWRP 162
TK K RP S GST S H + Q + FT V + W P
Sbjct: 94 TKAKKRPRSQGSTA-----SIHSAATQPNLDHAFTDVPEVYQSQWIP 135
>NCU06908.1 NCU06908.1 predicted protein (110522 - 114184)
Length = 1220
Score = 25.8 bits (55), Expect = 4.8
Identities = 11/30 (36%), Positives = 18/30 (59%)
Frame = +2
Query: 215 TLPNTTCLPSNQLVVTVVMKNWDPLVSLPA 304
T P+TT P ++L+ + +DPL + PA
Sbjct: 3 TTPDTTTTPKSKLIQQQQQQPFDPLSTTPA 32
>NCU07481.1 NCU07481.1 hypothetical protein (8754 - 5185)
Length = 1093
Score = 25.4 bits (54), Expect = 6.3
Identities = 10/16 (62%), Positives = 13/16 (80%)
Frame = -1
Query: 321 YLSMANAGRDTNGSQF 274
YL+ +NAGR TNGS +
Sbjct: 656 YLADSNAGRGTNGSSY 671
>NCU09343.1 NCU09343.1 hypothetical protein (18770 - 17676)
Length = 364
Score = 25.4 bits (54), Expect = 6.3
Identities = 19/49 (38%), Positives = 23/49 (46%), Gaps = 5/49 (10%)
Frame = +2
Query: 119 TSPLSAMTTLLFGVPFCLPSAS-----TL*TTSIPDNTLPNTTCLPSNQ 250
+SPLS MT L V PS+S T TT+ T TT P N+
Sbjct: 12 SSPLSFMTRLSQHVYLYRPSSSTTLSPTTTTTTTTTTTTTTTTTTPGNR 60
>NCU01959.1 NCU01959.1 hypothetical protein (1502 - 171)
Length = 368
Score = 25.4 bits (54), Expect = 6.3
Identities = 14/53 (26%), Positives = 21/53 (39%)
Frame = +1
Query: 73 HRSFHQSPFQVSSQRHFTAVGNDNLALWRPVLLALGLNLVDHVHSRQHLAEHD 231
H Q P S +R + + + RP L GL L DH R + + +
Sbjct: 314 HEGLRQIPVDYSQERPLSILSH---VFTRPALWGEGLELADHFDPRDGVQQEE 363
>NCU06832.1 NCU06832.1 hypothetical protein ( kinesin-like protein
Kif21a related protein [i
Length = 1755
Score = 25.0 bits (53), Expect = 8.2
Identities = 15/46 (32%), Positives = 23/46 (49%), Gaps = 2/46 (4%)
Frame = +1
Query: 16 RYTKTKNRPASNGSTTKT--SHRSFHQSPFQVSSQRHFTAVGNDNL 147
R+ K +R +N S +++ SHRS P + SS+ DNL
Sbjct: 742 RHRKMASRDYANHSRSQSHVSHRSQFDEPIRESSEEDIPEEDEDNL 787
Database: /phillip/Ncr/Ncr_P
Posted date: May 20, 2002 12:05 PM
Number of letters in database: 3,158,374
Number of sequences in database: 6531
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2339971
Number of Sequences: 6531
Number of extensions: 48458
Number of successful extensions: 181
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 177
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 181
length of query: 130
length of database: 3,158,374
effective HSP length: 42
effective length of query: 87
effective length of database: 2,884,072
effective search space: 250914264
effective search space used: 250914264
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)