BLASTX 2.1.3 [Apr-1-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query=
/phillip/projects/Xu/Fgr-S/seq_dir/blast_NcrP/Fgr-S_4_G12_T7.seq
(495 letters)
Database: /phillip/Ncr/Ncr_P
6531 sequences; 3,158,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
NCU00475.1 NCU00475.1 hypothetical protein (95049 - 96046) 189 5e-49
NCU09539.1 NCU09539.1 hypothetical protein (9925 - 9416) 29 0.61
NCU07556.1 NCU07556.1 hypothetical protein (4648 - 10405) 27 2.3
NCU02558.1 NCU02558.1 hypothetical protein (186941 - 188951) 27 3.9
NCU09746.1 NCU09746.1 hypothetical protein (83686 - 85863) 27 3.9
NCU01089.1 NCU01089.1 predicted protein (254426 - 256632) 25 8.8
>NCU00475.1 NCU00475.1 hypothetical protein (95049 - 96046)
Length = 205
Score = 189 bits (479), Expect = 5e-49
Identities = 90/97 (92%), Positives = 94/97 (96%)
Frame = -2
Query: 473 RYSNLVCKKADVDLNKRAGELTSEELERIVTILQNPTQYKIPTWFINRQRDIVDGKDSHI 294
RYSNLVCKKADVDL+KRAGELTSEELERIVTI+QNPT YKIP WF+NRQRDIVDGKDS I
Sbjct: 90 RYSNLVCKKADVDLSKRAGELTSEELERIVTIMQNPTAYKIPAWFLNRQRDIVDGKDSQI 149
Query: 293 LANGVDSKLREDLERLKKIRAHRGLRHYWGLRVRGQH 183
LANGVDSKLR+DLERLKKIRAHRGLRHYWGLRVRGQH
Sbjct: 150 LANGVDSKLRDDLERLKKIRAHRGLRHYWGLRVRGQH 186
>NCU09539.1 NCU09539.1 hypothetical protein (9925 - 9416)
Length = 119
Score = 29.3 bits (64), Expect = 0.61
Identities = 12/26 (46%), Positives = 19/26 (72%)
Frame = -2
Query: 263 EDLERLKKIRAHRGLRHYWGLRVRGQ 186
++++RL+ + +RG RH GL VRGQ
Sbjct: 75 DNIKRLRDMGTYRGRRHAMGLPVRGQ 100
>NCU07556.1 NCU07556.1 hypothetical protein (4648 - 10405)
Length = 1893
Score = 27.3 bits (59), Expect = 2.3
Identities = 17/45 (37%), Positives = 25/45 (54%)
Frame = -2
Query: 365 TQYKIPTWFINRQRDIVDGKDSHILANGVDSKLREDLERLKKIRA 231
+Q K+PT + Q + G + +AN + + ED ERLKKI A
Sbjct: 862 SQSKLPTLAVVVQGEPEAGPGAFSIANA-EKVVNEDFERLKKIMA 905
>NCU02558.1 NCU02558.1 hypothetical protein (186941 - 188951)
Length = 626
Score = 26.6 bits (57), Expect = 3.9
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = -1
Query: 246 QEDPRSPWSPTLLGSPCPWSAHQDHRSP 163
++ RSP PT + P P AH+ SP
Sbjct: 233 EDQRRSPLPPTFVSQPPPHPAHRHSTSP 260
>NCU09746.1 NCU09746.1 hypothetical protein (83686 - 85863)
Length = 725
Score = 26.6 bits (57), Expect = 3.9
Identities = 14/32 (43%), Positives = 14/32 (43%), Gaps = 1/32 (3%)
Frame = +2
Query: 191 HGHGDPSSVGDHGE-RGSS*GAQDPHGAWSRH 283
HGHG DHGE RG G HG H
Sbjct: 211 HGHGHGHKHHDHGEHRGGGGGGCGAHGHGHNH 242
>NCU01089.1 NCU01089.1 predicted protein (254426 - 256632)
Length = 589
Score = 25.4 bits (54), Expect = 8.8
Identities = 11/33 (33%), Positives = 16/33 (48%)
Frame = -2
Query: 101 RVDRRDGWFHLSEHSEGFAFRHTQLWLYLGRDH 3
++ R+D W L +AF +WL GR H
Sbjct: 433 KIIRKDWWHQLCHSWTHYAFVVPWMWLLQGRRH 465
Database: /phillip/Ncr/Ncr_P
Posted date: May 20, 2002 12:05 PM
Number of letters in database: 3,158,374
Number of sequences in database: 6531
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2709840
Number of Sequences: 6531
Number of extensions: 52389
Number of successful extensions: 187
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 184
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 187
length of query: 165
length of database: 3,158,374
effective HSP length: 42
effective length of query: 122
effective length of database: 2,884,072
effective search space: 351856784
effective search space used: 351856784
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)