BLASTX 2.1.3 [Apr-1-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query=
/phillip/projects/Xu/Fgr-S/seq_dir/blast_NcrP/Fgr-S_4_H06_T7.seq
(635 letters)
Database: /phillip/Ncr/Ncr_P
6531 sequences; 3,158,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
NCU09111.1 NCU09111.1 GLUCOSE-6-PHOSPHATE 1-DEHYDROGENASE (G6PD)... 130 1e-44
>NCU09111.1 NCU09111.1 GLUCOSE-6-PHOSPHATE 1-DEHYDROGENASE (G6PD)
(21972 - 23928)
Length = 491
Score = 130 bits (326), Expect(2) = 1e-44
Identities = 68/132 (51%), Positives = 89/132 (66%), Gaps = 3/132 (2%)
Frame = +1
Query: 151 RNEFVIRLQPSEAMYMKLTVKKPGLEMATEQSELDLSYGMRYQDVKIPEAYERLILDTIR 330
RNE V+R+QP+E++Y+K+ K PGL M T +ELDL+Y R+ D+KIPEAYE LILD ++
Sbjct: 354 RNELVMRIQPNESVYIKMNSKLPGLSMQTVVTELDLTYRRRFSDLKIPEAYESLILDCLK 413
Query: 331 GDQQHFVRRDELKAAWQIFTPLLHDIDAGK-LKAVSYKPGSRGPKEADELSEKVGY--MQ 501
GD +FVR DEL A+W+IFTPLLH +D K + + Y GSRGP D+ + GY
Sbjct: 414 GDHSNFVRDDELDASWRIFTPLLHYLDDNKEIIPMEYPYGSRGPAVLDDFTASYGYKFSD 473
Query: 502 THGYIWIPPTLA 537
GY W P T A
Sbjct: 474 AAGYQW-PTTSA 484
Score = 66.2 bits (160), Expect(2) = 1e-44
Identities = 30/43 (69%), Positives = 35/43 (80%)
Frame = +3
Query: 6 VAAEVHNERWEGVPFILKAGKALNSRKAEIRVQFKDVPGDIFK 134
+ A + NERW+GVPFI+KAGKALN +K EIRVQFKDV IFK
Sbjct: 308 LVAYIKNERWDGVPFIMKAGKALNEQKTEIRVQFKDVTSGIFK 350
Database: /phillip/Ncr/Ncr_P
Posted date: May 20, 2002 12:05 PM
Number of letters in database: 3,158,374
Number of sequences in database: 6531
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3999923
Number of Sequences: 6531
Number of extensions: 90172
Number of successful extensions: 192
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 184
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 191
length of query: 211
length of database: 3,158,374
effective HSP length: 42
effective length of query: 169
effective length of database: 2,884,072
effective search space: 487408168
effective search space used: 487408168
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)